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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42601 1qgh:I (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42602 1qgh:J (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42603 1qgh:J (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42604 1qgh:K (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42605 1qgh:K (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42606 1qgh:L (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42607 1qgh:L (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    42608 1qgj:A (1.9) BS01 CA 1.11.1.7 GO:0004601 ... Q39034 10713531
    42609 1qgj:A (1.9) BS02 CA 1.11.1.7 GO:0004601 ... Q39034 10713531
    42610 1qgj:A (1.9) BS03 HEM 1.11.1.7 GO:0004601 ... Q39034 10713531
    42611 1qgj:A (1.9) BS04 GSH 1.11.1.7 GO:0004601 ... Q39034 10713531
    42612 1qgj:B (1.9) BS01 CA 1.11.1.7 GO:0004601 ... Q39034 10713531
    42613 1qgj:B (1.9) BS02 CA 1.11.1.7 GO:0004601 ... Q39034 10713531
    42614 1qgj:B (1.9) BS03 HEM 1.11.1.7 GO:0004601 ... Q39034 10713531
    42615 1qgj:B (1.9) BS04 GSH 1.11.1.7 GO:0004601 ... Q39034 10713531
    42616 1qgl:A (2.66) BS01 MN ? GO:0030246 ... P02866 N/A
    42617 1qgl:A (2.66) BS02 CA ? GO:0030246 ... P02866 N/A
    42618 1qgl:A (2.66) BS03 EJT ? GO:0030246 ... P02866 N/A
    42619 1qgl:B (2.66) BS01 EJT ? GO:0030246 ... P02866 N/A
    42620 1qgl:B (2.66) BS02 MN ? GO:0030246 ... P02866 N/A
    42621 1qgl:B (2.66) BS03 CA ? GO:0030246 ... P02866 N/A
    42622 1qgn:A (2.9) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42623 1qgn:A (2.9) BS02 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42624 1qgn:B (2.9) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42625 1qgn:B (2.9) BS02 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42626 1qgn:C (2.9) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42627 1qgn:C (2.9) BS02 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42628 1qgn:D (2.9) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42629 1qgn:D (2.9) BS02 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42630 1qgn:E (2.9) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42631 1qgn:E (2.9) BS02 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42632 1qgn:F (2.9) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42633 1qgn:F (2.9) BS02 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42634 1qgn:G (2.9) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42635 1qgn:G (2.9) BS02 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42636 1qgn:H (2.9) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42637 1qgn:H (2.9) BS02 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 10438597
    42638 1qgq:A (1.5) BS01 MN ? GO:0016757 ... P39621 10350455
    42639 1qgq:A (1.5) BS02 UDP ? GO:0016757 ... P39621 10350455
    42640 1qgr:A (2.3) BS01 peptide ? GO:0003723 ... Q14974 10353244
    42641 1qgs:A (2.0) BS01 UDP ? GO:0016757 ... P39621 10350455
    42642 1qgu:A (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    42643 1qgu:A (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    42644 1qgu:B (1.6) BS01 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    42645 1qgu:B (1.6) BS02 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42646 1qgu:B (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42647 1qgu:C (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    42648 1qgu:C (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    42649 1qgu:D (1.6) BS01 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42650 1qgu:D (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    42651 1qgu:D (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42652 1qgw:A (1.63) BS01 DBV ? GO:0030089 ... Q00433 10430868
    42653 1qgw:A (1.63) BS02 DBV ? GO:0030089 ... Q00433 10430868
    42654 1qgw:A (1.63) BS03 PEB ? GO:0030089 ... Q00433 10430868
    42655 1qgw:A (1.63) BS04 PEB ? GO:0030089 ... Q00433 10430868
    42656 1qgw:A (1.63) BS05 PEB ? GO:0030089 ... Q00433 10430868
    42657 1qgw:B (1.63) BS01 DBV ? GO:0030089 ... P30943 10430868
    42658 1qgw:B (1.63) BS02 DBV ? GO:0030089 ... P30943 10430868
    42659 1qgw:B (1.63) BS03 PEB ? GO:0030089 ... P30943 10430868
    42660 1qgw:B (1.63) BS04 PEB ? GO:0030089 ... P30943 10430868
    42661 1qgw:C (1.63) BS01 PEB ? GO:0009507 ... P27198 10430868
    42662 1qgw:C (1.63) BS02 PEB ? GO:0009507 ... P27198 10430868
    42663 1qgw:C (1.63) BS03 PEB ? GO:0009507 ... P27198 10430868
    42664 1qgw:D (1.63) BS01 DBV ? GO:0009507 ... P27198 10430868
    42665 1qgw:D (1.63) BS02 PEB ? GO:0009507 ... P27198 10430868
    42666 1qgw:D (1.63) BS03 PEB ? GO:0009507 ... P27198 10430868
    42667 1qgw:D (1.63) BS04 PEB ? GO:0009507 ... P27198 10430868
    42668 1qgx:A (1.6) BS01 MG 3.1.3.7 GO:0000103 ... P32179 10656801
    42669 1qgx:A (1.6) BS02 PO4 3.1.3.7 GO:0000103 ... P32179 10656801
    42670 1qgx:A (1.6) BS03 AMP 3.1.3.7 GO:0000103 ... P32179 10656801
    42671 1qgy:A (1.7) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 15789405
    42672 1qgz:A (2.3) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 11342548
    42673 1qh0:A (1.93) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 11342548
    42674 1qh1:A (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    42675 1qh1:A (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    42676 1qh1:B (1.6) BS01 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    42677 1qh1:B (1.6) BS02 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42678 1qh1:B (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42679 1qh1:C (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    42680 1qh1:C (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    42681 1qh1:D (1.6) BS01 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42682 1qh1:D (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    42683 1qh1:D (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42684 1qh3:A (1.9) BS01 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    42685 1qh3:A (1.9) BS02 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    42686 1qh3:A (1.9) BS03 CAC 3.1.2.6 GO:0004416 ... Q16775 10508780
    42687 1qh3:A (1.9) BS04 ACT 3.1.2.6 GO:0004416 ... Q16775 10508780
    42688 1qh3:A (1.9) BS05 MN 3.1.2.6 GO:0004416 ... Q16775 10508780
    42689 1qh3:B (1.9) BS01 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    42690 1qh3:B (1.9) BS02 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    42691 1qh3:B (1.9) BS03 CAC 3.1.2.6 GO:0004416 ... Q16775 10508780
    42692 1qh3:B (1.9) BS04 ACT 3.1.2.6 GO:0004416 ... Q16775 10508780
    42693 1qh3:B (1.9) BS05 CAC 3.1.2.6 GO:0004416 ... Q16775 10508780
    42694 1qh3:B (1.9) BS06 MN 3.1.2.6 GO:0004416 ... Q16775 10508780
    42695 1qh4:D (1.41) BS01 CA 2.7.3.2 GO:0003824 ... P05122 10595529
    42696 1qh5:A (1.45) BS01 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    42697 1qh5:A (1.45) BS02 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    42698 1qh5:A (1.45) BS03 GSH 3.1.2.6 GO:0004416 ... Q16775 10508780
    42699 1qh5:B (1.45) BS01 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    42700 1qh5:B (1.45) BS02 ZN 3.1.2.6 GO:0004416 ... Q16775 10508780
    42701 1qh5:B (1.45) BS03 GBP 3.1.2.6 GO:0004416 ... Q16775 10508780
    42702 1qh6:A (2.0) BS01 X2F 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    42703 1qh6:A (2.0) BS02 XYP 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    42704 1qh6:B (2.0) BS01 X2F 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    42705 1qh6:B (2.0) BS02 XYP 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    42706 1qh7:A (1.78) BS01 XYP 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    42707 1qh7:B (1.78) BS01 XYP 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    42708 1qh8:A (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    42709 1qh8:A (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    42710 1qh8:B (1.6) BS01 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    42711 1qh8:B (1.6) BS02 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42712 1qh8:B (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42713 1qh8:C (1.6) BS01 CFM 1.18.6.1 GO:0005524 ... P00466 10525412
    42714 1qh8:C (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P00466 10525412
    42715 1qh8:D (1.6) BS01 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42716 1qh8:D (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P09772 10525412
    42717 1qh8:D (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    42718 1qha:A (2.25) BS01 GLC 2.7.1.1 GO:0001678 ... P19367 10574795
    42719 1qha:A (2.25) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    42720 1qha:A (2.25) BS03 GLC 2.7.1.1 GO:0001678 ... P19367 10574795
    42721 1qha:A (2.25) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    42722 1qha:A (2.25) BS05 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    42723 1qha:A (2.25) BS06 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    42724 1qha:A (2.25) BS07 ANP 2.7.1.1 GO:0001678 ... P19367 10574795
    42725 1qha:B (2.25) BS01 GLC 2.7.1.1 GO:0001678 ... P19367 10574795
    42726 1qha:B (2.25) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    42727 1qha:B (2.25) BS03 GLC 2.7.1.1 GO:0001678 ... P19367 10574795
    42728 1qha:B (2.25) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 10574795
    42729 1qha:B (2.25) BS05 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    42730 1qha:B (2.25) BS06 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    42731 1qha:B (2.25) BS07 ANP 2.7.1.1 GO:0001678 ... P19367 10574795
    42732 1qhb:A (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    42733 1qhb:B (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    42734 1qhb:C (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    42735 1qhb:D (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    42736 1qhb:E (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    42737 1qhb:F (2.3) BS01 CA 1.11.1.18 GO:0004601 ... Q8LLW7 10843856
    42738 1qhc:A (1.7) BS01 PUA 4.6.1.18 GO:0003676 ... P61823 10441122 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    42739 1qhc:B (1.7) BS01 PUA 4.6.1.18 GO:0003676 ... P61823 10441122 MOAD: Ki=27nM
    42740 1qhd:A (1.95) BS01 CA ? GO:0005198 ... P04509 11285213
    42741 1qhd:A (1.95) BS02 CA ? GO:0005198 ... P04509 11285213
    42742 1qhf:A (1.7) BS01 3PG 5.4.2.11 GO:0003824 ... P00950 10531478
    42743 1qhf:B (1.7) BS01 3PG 5.4.2.11 GO:0003824 ... P00950 10531478
    42744 1qhg:A (2.5) BS01 ATP 5.6.2.4 GO:0000725 ... P56255 10388562
    42745 1qhh:A (2.5) BS01 ATP 5.6.2.4 GO:0003677 ... P56255 10388562
    42746 1qhh:D (2.5) BS01 ATP 5.6.2.4 GO:0003677 ... P56255 10388562
    42747 1qhi:A (1.9) BS01 BPG 2.7.1.21 GO:0004797 ... P0DTH5 9989588
    42748 1qhi:B (1.9) BS01 BPG 2.7.1.21 GO:0004797 ... P0DTH5 9989588
    42749 1qhj:A (1.9) BS01 RET ? GO:0005216 ... P02945 10467143
    42750 1qhj:A (1.9) BS02 PH1 ? GO:0005216 ... P02945 10467143
    42751 1qhj:A (1.9) BS03 PH1 ? GO:0005216 ... P02945 10467143
    42752 1qhj:A (1.9) BS04 PH1 ? GO:0005216 ... P02945 10467143
    42753 1qhj:A (1.9) BS05 PH1 ? GO:0005216 ... P02945 10467143
    42754 1qhj:A (1.9) BS06 PH1 ? GO:0005216 ... P02945 10467143
    42755 1qhj:A (1.9) BS07 PH1 ? GO:0005216 ... P02945 10467143
    42756 1qhn:A (2.7) BS01 SO4 2.7.1.- GO:0005524 ... Q56148 10835366
    42757 1qho:A (1.7) BS01 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42758 1qho:A (1.7) BS02 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42759 1qho:A (1.7) BS03 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42760 1qho:A (1.7) BS04 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42761 1qho:A (1.7) BS05 BGC 3.2.1.133 GO:0003824 ... P19531 10387084
    42762 1qho:A (1.7) BS06 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42763 1qho:A (1.7) BS07 AGL 3.2.1.133 GO:0003824 ... P19531 10387084
    42764 1qho:A (1.7) BS08 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42765 1qho:A (1.7) BS09 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42766 1qho:A (1.7) BS10 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42767 1qho:A (1.7) BS11 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    42768 1qho:A (1.7) BS12 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    42769 1qho:A (1.7) BS13 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    42770 1qhp:A (1.7) BS01 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42771 1qhp:A (1.7) BS02 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42772 1qhp:A (1.7) BS03 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42773 1qhp:A (1.7) BS04 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42774 1qhp:A (1.7) BS05 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42775 1qhp:A (1.7) BS06 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42776 1qhp:A (1.7) BS07 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42777 1qhp:A (1.7) BS08 GLC 3.2.1.133 GO:0003824 ... P19531 10387084
    42778 1qhp:A (1.7) BS09 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    42779 1qhp:A (1.7) BS10 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    42780 1qhp:A (1.7) BS11 CA 3.2.1.133 GO:0003824 ... P19531 10387084
    42781 1qhq:A (1.55) BS01 CU ? GO:0005507 ... P27197 11178893
    42782 1qhr:B (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10387040
    42783 1qhr:B (2.2) BS02 157 3.4.21.5 GO:0004252 ... P00734 10387040 PDBbind: -logKd/Ki=6.89, IC50=130nM
    BindingDB: IC50=130nM
    42784 1qhs:A (2.8) BS01 SO4 2.7.1.- GO:0005524 ... Q56148 10835366
    42785 1qhs:A (2.8) BS02 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    42786 1qhs:A (2.8) BS03 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    42787 1qhu:A (2.3) BS01 HEM ? GO:0006879 ... P20058 10504726
    42788 1qhw:A (2.2) BS01 FE 3.1.3.2 GO:0003993 ... P29288 10438611
    42789 1qhw:A (2.2) BS02 FE 3.1.3.2 GO:0003993 ... P29288 10438611
    42790 1qhx:A (2.5) BS01 ATP 2.7.1.- GO:0005524 ... Q56148 10835366
    42791 1qhy:A (2.6) BS01 MG 2.7.1.- GO:0005524 ... Q56148 10835366
    42792 1qhy:A (2.6) BS02 AGS 2.7.1.- GO:0005524 ... Q56148 10835366
    42793 1qhy:A (2.6) BS03 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    42794 1qhy:A (2.6) BS04 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    42795 1qhz:A (1.95) BS01 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    42796 1qhz:A (1.95) BS02 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    42797 1qhz:A (1.95) BS03 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    42798 1qi0:A (2.1) BS01 BGC 3.2.1.4 GO:0000272 ... O85465 10731432
    42799 1qi0:A (2.1) BS02 BGC 3.2.1.4 GO:0000272 ... O85465 10731432
    42800 1qi0:A (2.1) BS03 CA 3.2.1.4 GO:0000272 ... O85465 10731432
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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