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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    37401 1ofw:B (1.5) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    37402 1ofw:B (1.5) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    37403 1ofw:B (1.5) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    37404 1ofw:B (1.5) BS10 HEC ? GO:0009055 ... Q9RN68 12750363
    37405 1ofy:A (2.0) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    37406 1ofy:A (2.0) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    37407 1ofy:A (2.0) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    37408 1ofy:A (2.0) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    37409 1ofy:A (2.0) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    37410 1ofy:A (2.0) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    37411 1ofy:A (2.0) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    37412 1ofy:A (2.0) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    37413 1ofy:A (2.0) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    37414 1ofy:B (2.0) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    37415 1ofy:B (2.0) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    37416 1ofy:B (2.0) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    37417 1ofy:B (2.0) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    37418 1ofy:B (2.0) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    37419 1ofy:B (2.0) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    37420 1ofy:B (2.0) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    37421 1ofy:B (2.0) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    37422 1ofy:B (2.0) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    37423 1ofy:B (2.0) BS10 HEC ? GO:0009055 ... Q9RN68 12750363
    37424 1ofz:A (1.5) BS01 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37425 1ofz:A (1.5) BS02 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37426 1ofz:A (1.5) BS03 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37427 1ofz:A (1.5) BS04 FUC ? GO:0030246 ... P18891 12732625
    37428 1ofz:A (1.5) BS05 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37429 1ofz:A (1.5) BS06 FUC ? GO:0030246 ... P18891 12732625
    37430 1ofz:B (1.5) BS01 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37431 1ofz:B (1.5) BS02 FUC ? GO:0030246 ... P18891 12732625
    37432 1ofz:B (1.5) BS03 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37433 1ofz:B (1.5) BS04 FUC ? GO:0030246 ... P18891 12732625
    37434 1ofz:B (1.5) BS05 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37435 1ofz:B (1.5) BS06 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37436 1og0:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37437 1og0:A (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37438 1og0:B (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37439 1og0:B (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37440 1og0:C (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37441 1og0:C (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37442 1og0:C (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37443 1og0:D (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37444 1og0:D (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37445 1og0:D (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37446 1og0:E (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37447 1og0:E (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37448 1og0:E (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37449 1og0:F (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37450 1og0:F (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37451 1og0:F (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37452 1og0:G (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37453 1og0:G (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37454 1og0:G (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37455 1og0:H (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37456 1og0:H (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37457 1og0:H (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37458 1og1:A (2.0) BS01 TAD 2.4.2.31
    3.2.2.5    		 GO:0106274 ... P20974 12939142
    37459 1og2:A (2.6) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    37460 1og2:B (2.6) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    37461 1og3:A (2.6) BS01 NAD 2.4.2.31
    3.2.2.5    		 GO:0106274 ... P20974 12939142
    37462 1og4:A (2.6) BS01 NAI 2.4.2.31
    3.2.2.5    		 GO:0106274 ... P20974 12939142
    37463 1og5:A (2.55) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    37464 1og5:A (2.55) BS02 SWF 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    37465 1og5:B (2.55) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    37466 1og5:B (2.55) BS02 SWF 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    37467 1og6:A (2.8) BS01 NAP 1.-.-.- GO:0005829 ... P76187 N/A
    37468 1og6:B (2.8) BS01 NAP 1.-.-.- GO:0005829 ... P76187 N/A
    37469 1og6:C (2.8) BS01 NAP 1.-.-.- GO:0005829 ... P76187 N/A
    37470 1oga:A (1.4) BS01 peptide ? N/A P04439 12796775
    37471 1oga:D (1.4) BS01 peptide ? N/A P01848 12796775
    37472 1oga:E (1.4) BS01 peptide ? N/A P01850 12796775
    37473 1ogd:A (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    37474 1ogd:B (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    37475 1ogd:C (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    37476 1ogd:D (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    37477 1ogd:E (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    37478 1oge:A (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    37479 1oge:B (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    37480 1oge:C (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    37481 1oge:D (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    37482 1oge:E (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    37483 1ogg:A (1.97) BS01 AMI 3.2.1.14 GO:0004553 ... P11797 14726210 PDBbind: -logKd/Ki=5.19, Ki=6.4uM
    37484 1ogg:B (1.97) BS01 AMI 3.2.1.14 GO:0004553 ... P11797 14726210
    37485 1ogi:A (1.64) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 14500716
    37486 1ogj:A (1.64) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 14500716
    37487 1ogo:X (1.65) BS01 BGC 3.2.1.11 GO:0004553 ... P48845 12962629
    37488 1ogo:X (1.65) BS02 GLC 3.2.1.11 GO:0004553 ... P48845 12962629
    37489 1ogp:A (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37490 1ogp:B (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37491 1ogp:C (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37492 1ogp:D (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37493 1ogp:E (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37494 1ogp:F (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37495 1ogt:A (1.47) BS01 peptide ? N/A P01889 14734527
    37496 1ogu:A (2.6) BS01 ST8 2.7.11.22 GO:0000082 ... P24941 12941338 PDBbind: -logKd/Ki=7.47, IC50=0.034uM
    BindingDB: Ki=2400nM, IC50=34nM
    37497 1ogu:C (2.6) BS01 ST8 2.7.11.22 GO:0000082 ... P24941 12941338 BindingDB: Ki=2400nM, IC50=34nM
    37498 1ogv:H (2.35) BS01 CDL ? GO:0015979 ... P0C0Y7 12899837
    37499 1ogv:L (2.35) BS01 BCL ? GO:0009772 ... P0C0Y8 12899837
    37500 1ogv:L (2.35) BS02 BCL ? GO:0009772 ... P0C0Y8 12899837
    37501 1ogv:L (2.35) BS03 BPH ? GO:0009772 ... P0C0Y8 12899837
    37502 1ogv:L (2.35) BS04 BCL ? GO:0009772 ... P0C0Y8 12899837
    37503 1ogv:L (2.35) BS05 BPH ? GO:0009772 ... P0C0Y8 12899837
    37504 1ogv:L (2.35) BS06 U10 ? GO:0009772 ... P0C0Y8 12899837
    37505 1ogv:L (2.35) BS07 FE2 ? GO:0009772 ... P0C0Y8 12899837
    37506 1ogv:M (2.35) BS01 BCL ? GO:0009772 ... P0C0Y9 12899837
    37507 1ogv:M (2.35) BS02 BPH ? GO:0009772 ... P0C0Y9 12899837
    37508 1ogv:M (2.35) BS03 BCL ? GO:0009772 ... P0C0Y9 12899837
    37509 1ogv:M (2.35) BS04 BCL ? GO:0009772 ... P0C0Y9 12899837
    37510 1ogv:M (2.35) BS05 BPH ? GO:0009772 ... P0C0Y9 12899837
    37511 1ogv:M (2.35) BS06 U10 ? GO:0009772 ... P0C0Y9 12899837
    37512 1ogv:M (2.35) BS07 CDL ? GO:0009772 ... P0C0Y9 12899837
    37513 1ogv:M (2.35) BS08 FE2 ? GO:0009772 ... P0C0Y9 12899837
    37514 1ogv:M (2.35) BS09 CL ? GO:0009772 ... P0C0Y9 12899837
    37515 1ogx:A (2.0) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 11007792 MOAD: Kd=0.81uM
    37516 1ogx:B (2.0) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 11007792 MOAD: Kd=0.81uM
    37517 1ogy:A (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    37518 1ogy:A (3.2) BS02 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37519 1ogy:A (3.2) BS03 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37520 1ogy:A (3.2) BS04 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    37521 1ogy:B (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    37522 1ogy:B (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    37523 1ogy:C (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    37524 1ogy:C (3.2) BS02 MO 1.9.6.1 GO:0005506 ... Q53176 14528294
    37525 1ogy:C (3.2) BS03 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37526 1ogy:C (3.2) BS04 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37527 1ogy:C (3.2) BS05 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    37528 1ogy:D (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    37529 1ogy:D (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    37530 1ogy:D (3.2) BS03 HEC ? GO:0009061 ... Q53177 14528294
    37531 1ogy:E (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    37532 1ogy:E (3.2) BS02 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37533 1ogy:E (3.2) BS03 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37534 1ogy:F (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    37535 1ogy:F (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    37536 1ogy:G (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    37537 1ogy:G (3.2) BS02 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37538 1ogy:G (3.2) BS03 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37539 1ogy:H (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    37540 1ogy:H (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    37541 1ogy:I (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    37542 1ogy:I (3.2) BS02 MO 1.9.6.1 GO:0005506 ... Q53176 14528294
    37543 1ogy:I (3.2) BS03 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37544 1ogy:I (3.2) BS04 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37545 1ogy:I (3.2) BS05 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    37546 1ogy:J (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    37547 1ogy:J (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    37548 1ogy:K (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    37549 1ogy:K (3.2) BS02 MO 1.9.6.1 GO:0005506 ... Q53176 14528294
    37550 1ogy:K (3.2) BS03 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37551 1ogy:K (3.2) BS04 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37552 1ogy:K (3.2) BS05 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    37553 1ogy:L (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    37554 1ogy:L (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    37555 1ogy:M (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    37556 1ogy:M (3.2) BS02 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37557 1ogy:M (3.2) BS03 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37558 1ogy:M (3.2) BS04 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    37559 1ogy:N (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    37560 1ogy:N (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    37561 1ogy:O (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    37562 1ogy:O (3.2) BS02 MO 1.9.6.1 GO:0005506 ... Q53176 14528294
    37563 1ogy:O (3.2) BS03 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37564 1ogy:O (3.2) BS04 MGD 1.9.6.1 GO:0005506 ... Q53176 14528294
    37565 1ogy:O (3.2) BS05 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    37566 1ogy:P (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    37567 1ogy:P (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    37568 1ogz:A (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 12852789 MOAD: Kd=1.4uM
    PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    37569 1oh0:A (1.1) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 9369474
    37570 1oh0:B (1.1) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 9369474
    37571 1oh2:P (2.4) BS01 GLC ? GO:0015288 ... P22340 N/A
    37572 1oh2:P (2.4) BS02 FRU ? GO:0015288 ... P22340 N/A
    37573 1oh2:P (2.4) BS03 GLC ? GO:0015288 ... P22340 N/A
    37574 1oh2:P (2.4) BS04 CA ? GO:0015288 ... P22340 N/A
    37575 1oh2:Q (2.4) BS01 GLC ? GO:0015288 ... P22340 N/A
    37576 1oh2:Q (2.4) BS02 FRU ? GO:0015288 ... P22340 N/A
    37577 1oh2:Q (2.4) BS03 GLC ? GO:0015288 ... P22340 N/A
    37578 1oh2:Q (2.4) BS04 CA ? GO:0015288 ... P22340 N/A
    37579 1oh2:R (2.4) BS01 GLC ? GO:0015288 ... P22340 N/A
    37580 1oh2:R (2.4) BS02 FRU ? GO:0015288 ... P22340 N/A
    37581 1oh2:R (2.4) BS03 GLC ? GO:0015288 ... P22340 N/A
    37582 1oh2:R (2.4) BS04 CA ? GO:0015288 ... P22340 N/A
    37583 1oh3:A (1.5) BS01 BGC ? N/A Q9C171 15003456
    37584 1oh3:A (1.5) BS02 BGC ? N/A Q9C171 15003456
    37585 1oh3:A (1.5) BS03 BGC ? N/A Q9C171 15003456
    37586 1oh3:B (1.5) BS01 BGC ? N/A Q9C171 15003456
    37587 1oh3:B (1.5) BS02 BGC ? N/A Q9C171 15003456
    37588 1oh4:A (1.35) BS01 BMA ? N/A Q9RIK9 12791255
    37589 1oh4:A (1.35) BS02 BMA ? N/A Q9RIK9 12791255
    37590 1oh4:A (1.35) BS03 BMA ? N/A Q9RIK9 12791255
    37591 1oh4:A (1.35) BS04 BMA ? N/A Q9RIK9 12791255
    37592 1oh4:A (1.35) BS05 CA ? N/A Q9RIK9 12791255
    37593 1oh5:A (2.9) BS01 dna ? GO:0000018 ... P23909 12907723
    37594 1oh5:A (2.9) BS02 dna ? GO:0000018 ... P23909 12907723
    37595 1oh5:A (2.9) BS03 ADP ? GO:0000018 ... P23909 12907723
    37596 1oh5:B (2.9) BS01 dna ? GO:0000018 ... P23909 12907723
    37597 1oh6:A (2.4) BS01 dna ? GO:0000018 ... P23909 12907723
    37598 1oh6:A (2.4) BS02 dna ? GO:0000018 ... P23909 12907723
    37599 1oh6:A (2.4) BS03 ADP ? GO:0000018 ... P23909 12907723
    37600 1oh6:B (2.4) BS01 dna ? GO:0000018 ... P23909 12907723
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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