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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    29601 1lqt:A (1.05) BS02 ODP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29602 1lqt:B (1.05) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29603 1lqt:B (1.05) BS02 ODP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29604 1lqu:A (1.25) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29605 1lqu:A (1.25) BS02 NDP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29606 1lqu:B (1.25) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29607 1lqu:B (1.25) BS02 NDP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29608 1lqv:C (1.6) BS01 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29609 1lqv:C (1.6) BS02 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29610 1lqv:C (1.6) BS03 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29611 1lqv:C (1.6) BS04 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29612 1lqv:C (1.6) BS05 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29613 1lqv:C (1.6) BS06 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29614 1lqv:D (1.6) BS01 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29615 1lqv:D (1.6) BS02 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29616 1lqv:D (1.6) BS03 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29617 1lqv:D (1.6) BS04 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29618 1lqv:D (1.6) BS05 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29619 1lqv:D (1.6) BS06 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29620 1lqw:A (1.87) BS01 ZN 3.5.1.88 GO:0006412 ... P68826 12126617
    29621 1lqw:B (1.87) BS01 ZN 3.5.1.88 GO:0006412 ... P68826 12126617
    29622 1lqx:A (1.8) BS01 HEM ? GO:0020037 ... P00171 12136141
    29623 1lqy:A (1.9) BS01 BB2 3.5.1.88 GO:0006412 ... O31410 12126617
    29624 1lr5:A (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29625 1lr5:A (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29626 1lr5:A (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29627 1lr5:B (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29628 1lr5:B (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29629 1lr5:B (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29630 1lr5:C (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29631 1lr5:C (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29632 1lr5:C (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29633 1lr5:D (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29634 1lr5:D (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29635 1lr5:D (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29636 1lr6:A (1.9) BS01 HEM ? GO:0020037 ... P00171 12136141
    29637 1lr7:A (1.5) BS01 SO4 ? N/A P21674 12867435
    29638 1lr7:A (1.5) BS02 SO4 ? N/A P21674 12867435
    29639 1lr8:A (2.1) BS01 IHS ? N/A P21674 12867435 MOAD: Kd=10nM
    29640 1lra:A (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 7906540
    29641 1lrh:A (1.9) BS01 BMA ? GO:0000911 ... P13689 12065401
    29642 1lrh:A (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29643 1lrh:A (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29644 1lrh:A (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    29645 1lrh:B (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29646 1lrh:B (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29647 1lrh:B (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29648 1lrh:B (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    29649 1lrh:C (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29650 1lrh:C (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29651 1lrh:C (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29652 1lrh:C (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    29653 1lrh:D (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29654 1lrh:D (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29655 1lrh:D (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29656 1lrh:D (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    29657 1lri:A (1.45) BS01 CLR ? GO:0001907 ... P15570 12198300
    29658 1lrj:A (1.9) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    29659 1lrj:A (1.9) BS02 UD1 5.1.3.2 GO:0003978 ... P09147 12019271
    29660 1lrk:A (1.75) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    29661 1lrk:A (1.75) BS02 UD1 5.1.3.2 GO:0003978 ... P09147 12019271
    29662 1lrl:A (1.8) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    29663 1lrl:A (1.8) BS02 UPG 5.1.3.2 GO:0003978 ... P09147 12019271
    29664 1lrm:A (2.1) BS01 FE 1.14.16.1 GO:0004497 ... P00439 N/A
    29665 1lrm:A (2.1) BS02 HBI 1.14.16.1 GO:0004497 ... P00439 N/A
    29666 1lrn:A (2.1) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    29667 1lrn:B (2.1) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    29668 1lro:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    29669 1lro:B (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    29670 1lrq:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    29671 1lrq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 12441100
    29672 1lrq:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    29673 1lrr:A (2.65) BS01 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    29674 1lrr:A (2.65) BS02 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    29675 1lrr:D (2.65) BS01 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    29676 1lrr:D (2.65) BS02 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    29677 1lrt:A (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    29678 1lrt:A (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    29679 1lrt:B (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    29680 1lrt:B (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    29681 1lrt:C (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    29682 1lrt:C (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    29683 1lrt:D (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    29684 1lrt:D (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    29685 1lru:A (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29686 1lru:A (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29687 1lru:B (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29688 1lru:B (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29689 1lru:C (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29690 1lru:C (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29691 1lrw:A (2.5) BS01 CA 1.1.2.7 GO:0005509 ... P12293 14505072
    29692 1lrw:A (2.5) BS02 PQQ 1.1.2.7 GO:0005509 ... P12293 14505072
    29693 1lrw:C (2.5) BS01 CA 1.1.2.7 GO:0005509 ... P12293 14505072
    29694 1lrw:C (2.5) BS02 PQQ 1.1.2.7 GO:0005509 ... P12293 14505072
    29695 1lry:A (2.6) BS01 ZN 3.5.1.88 GO:0006412 ... Q9I7A8 12126617
    29696 1lry:A (2.6) BS02 BB2 3.5.1.88 GO:0006412 ... Q9I7A8 12126617
    29697 1ls1:A (1.1) BS01 OXY 3.6.5.4 GO:0003924 ... O07347 12095255
    29698 1ls1:A (1.1) BS02 OXY 3.6.5.4 GO:0003924 ... O07347 12095255
    29699 1ls3:A (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29700 1ls3:A (2.7) BS02 GLY 2.1.2.1 GO:0000900 ... P07511 12438316
    29701 1ls3:A (2.7) BS03 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29702 1ls3:A (2.7) BS04 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    29703 1ls3:B (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29704 1ls3:B (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29705 1ls3:B (2.7) BS03 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    29706 1ls3:C (2.7) BS01 GLY 2.1.2.1 GO:0000900 ... P07511 12438316
    29707 1ls3:C (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29708 1ls3:C (2.7) BS03 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29709 1ls3:C (2.7) BS04 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    29710 1ls3:D (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29711 1ls3:D (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29712 1ls3:D (2.7) BS03 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    29713 1ls5:A (2.8) BS01 peptide 3.4.23.39 GO:0004190 ... Q8IM16 12614616
    29714 1ls5:B (2.8) BS01 peptide 3.4.23.39 GO:0004190 ... Q8IM16 12614616
    29715 1ls6:A (1.9) BS01 A3P 2.8.2.1 GO:0004062 ... P50225 12471039
    29716 1ls6:A (1.9) BS02 NPO 2.8.2.1 GO:0004062 ... P50225 12471039
    29717 1ls6:A (1.9) BS03 NPO 2.8.2.1 GO:0004062 ... P50225 12471039
    29718 1ls9:A (1.3) BS01 HEM ? GO:0005506 ... P83391 12475218
    29719 1lsj:A (2.5) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    29720 1lsj:B (2.5) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    29721 1lsl:A (1.9) BS01 FUL ? N/A P07996 12391027
    29722 1lso:A (2.6) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    29723 1lso:B (2.6) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    29724 1lsp:A (2.45) BS01 BUL 3.2.1.17 GO:0003796 ... P00717 15299731
    29725 1lss:A (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    29726 1lss:B (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    29727 1lss:C (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    29728 1lss:D (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    29729 1lst:A (1.8) BS01 LYS ? GO:0006865 ... P02911 8496186 PDBbind: -logKd/Ki=7.85, Kd=14nM
    29730 1lsu:A (2.85) BS01 NAI ? GO:0006813 ... O32080 12086676
    29731 1lsu:B (2.85) BS01 NAI ? GO:0006813 ... O32080 12086676
    29732 1lsv:A (2.4) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    29733 1lsw:A (2.2) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    29734 1lsx:A (2.7) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    29735 1lsx:A (2.7) BS02 1MZ 2.7.13.3 GO:0006355 ... P23222 12390021
    29736 1lsz:A (2.0) BS01 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    29737 1lsz:A (2.0) BS02 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    29738 1lsz:A (2.0) BS03 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    29739 1lt0:A (2.4) BS01 CYN 2.7.13.3 GO:0006355 ... P23222 12390021
    29740 1lt0:A (2.4) BS02 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    29741 1lt3:D (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    29742 1lt3:E (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    29743 1lt3:F (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    29744 1lt3:G (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    29745 1lt3:H (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    29746 1lt4:D (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    29747 1lt4:E (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    29748 1lt4:F (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    29749 1lt4:G (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    29750 1lt4:H (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    29751 1lt5:D (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    29752 1lt5:E (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    29753 1lt5:F (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    29754 1lt5:F (1.7) BS02 GAL ? GO:0005576 ... P32890 9384564
    29755 1lt5:G (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    29756 1lt5:H (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    29757 1lt6:D (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564 PDBbind: -logKd/Ki=3.30, IC50=0.5mM
    29758 1lt6:E (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564 PDBbind: -logKd/Ki=3.30, IC50=0.5mM
    29759 1lt6:F (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29760 1lt6:G (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29761 1lt6:H (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29762 1lt6:L (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29763 1lt6:M (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29764 1lt6:N (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29765 1lt6:O (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29766 1lt6:P (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29767 1lt8:A (2.05) BS01 ZN 2.1.1.5 GO:0005634 ... Q93088 12220488
    29768 1lt8:A (2.05) BS02 CBH 2.1.1.5 GO:0005634 ... Q93088 12220488 BindingDB: Kd=280nM, Ki=12nM, IC50=87nM
    29769 1lt8:B (2.05) BS01 ZN 2.1.1.5 GO:0005634 ... Q93088 12220488
    29770 1lt8:B (2.05) BS02 CBH 2.1.1.5 GO:0005634 ... Q93088 12220488 BindingDB: Kd=280nM, Ki=12nM, IC50=87nM
    29771 1lt9:B (2.8) BS01 CA ? GO:0005102 ... P02675 12356313
    29772 1lt9:B (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    29773 1lt9:C (2.8) BS01 CA ? GO:0005102 ... P02679 12356313
    29774 1lt9:E (2.8) BS01 CA ? GO:0005102 ... P02675 12356313
    29775 1lt9:E (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    29776 1lt9:F (2.8) BS01 CA ? GO:0005102 ... P02679 12356313
    29777 1lta:D (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    29778 1lta:E (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    29779 1lta:F (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    29780 1lta:G (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    29781 1lta:H (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    29782 1ltd:A (2.6) BS01 SO3 1.1.2.3 GO:0016491 ... P00175 8003966
    29783 1ltd:A (2.6) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 8003966
    29784 1ltd:A (2.6) BS03 HEM 1.1.2.3 GO:0016491 ... P00175 8003966
    29785 1ltd:B (2.6) BS01 SO3 1.1.2.3 GO:0016491 ... P00175 8003966
    29786 1ltd:B (2.6) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 8003966
    29787 1lte:A (2.0) BS01 BGC ? GO:0030246 ... P16404 1948067
    29788 1lte:A (2.0) BS02 GAL ? GO:0030246 ... P16404 1948067
    29789 1lte:A (2.0) BS03 MN ? GO:0030246 ... P16404 1948067
    29790 1lte:A (2.0) BS04 CA ? GO:0030246 ... P16404 1948067
    29791 1lth:R (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... E8ME30 7656036
    29792 1lth:R (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... E8ME30 7656036
    29793 1lth:T (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... E8ME30 7656036
    29794 1lth:T (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... E8ME30 7656036
    29795 1lti:D (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    29796 1lti:E (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    29797 1lti:G (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    29798 1lti:H (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    29799 1ltj:B (2.8) BS01 peptide ? GO:0005102 ... P02675 12356313
    29800 1ltj:B (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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