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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28801 1lei:A (2.7) BS02 dna ? GO:0003677 ... Q04207 11970949 PDBbind: Kd=0.8nM
    28802 1lei:B (2.7) BS01 dna ? GO:0003677 ... P25799 11970949 PDBbind: Kd=0.8nM
    28803 1lei:B (2.7) BS02 dna ? GO:0003677 ... P25799 11970949 PDBbind: Kd=0.8nM
    28804 1lek:A (2.15) BS01 peptide ? N/A P01901 11994422
    28805 1lek:A (2.15) BS02 FUC ? N/A P01901 11994422
    28806 1lel:A (2.9) BS01 BH7 ? GO:0005576 ... P02701 12055191
    28807 1lel:B (2.9) BS01 BH7 ? GO:0005576 ... P02701 12055191
    28808 1lem:A (3.0) BS01 GLC ? GO:0030246 ... P02870 7696853
    28809 1lem:A (3.0) BS02 CA ? GO:0030246 ... P02870 7696853
    28810 1lem:A (3.0) BS03 MN ? GO:0030246 ... P02870 7696853
    28811 1lem:B (3.0) BS01 GLC ? GO:0030246 ... P02870 7696853
    28812 1len:A (1.8) BS01 PO4 ? GO:0030246 ... P02870 7731952
    28813 1len:A (1.8) BS02 MN ? GO:0030246 ... P02870 7731952
    28814 1len:A (1.8) BS03 CA ? GO:0030246 ... P02870 7731952
    28815 1len:C (1.8) BS01 PO4 ? GO:0030246 ... P02870 7731952
    28816 1len:C (1.8) BS02 MN ? GO:0030246 ... P02870 7731952
    28817 1len:C (1.8) BS03 CA ? GO:0030246 ... P02870 7731952
    28818 1les:A (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736
    28819 1les:A (1.9) BS02 CA ? GO:0030246 ... P02870 7592736
    28820 1les:A (1.9) BS03 MN ? GO:0030246 ... P02870 7592736
    28821 1les:B (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736
    28822 1les:C (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736
    28823 1les:C (1.9) BS02 CA ? GO:0030246 ... P02870 7592736
    28824 1les:C (1.9) BS03 MN ? GO:0030246 ... P02870 7592736
    28825 1les:D (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736
    28826 1lev:A (2.15) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 12781194
    28827 1lev:A (2.15) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    28828 1lev:A (2.15) BS03 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    28829 1lev:A (2.15) BS04 CLI 3.1.3.11 GO:0005737 ... P00636 12781194 MOAD: ic50=2.5uM
    PDBbind: -logKd/Ki=5.60, IC50=2.5uM
    28830 1lev:F (2.15) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 12781194
    28831 1lev:F (2.15) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    28832 1lev:F (2.15) BS03 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    28833 1lev:F (2.15) BS04 CLI 3.1.3.11 GO:0005737 ... P00636 12781194 MOAD: ic50=2.5uM
    28834 1lew:A (2.3) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 12086621
    28835 1lez:A (2.3) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 12086621
    28836 1lf0:A (1.7) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12213964
    28837 1lf0:A (1.7) BS02 CA 3.6.5.2 GO:0003924 ... P01112 12213964
    28838 1lf0:A (1.7) BS03 CA 3.6.5.2 GO:0003924 ... P01112 12213964
    28839 1lf0:A (1.7) BS04 GNP 3.6.5.2 GO:0003924 ... P01112 12213964
    28840 1lf2:A (1.8) BS01 R37 3.4.23.39 GO:0004190 ... P46925 12454457 PDBbind: -logKd/Ki=7.52, Ki=30nM
    28841 1lf3:A (2.7) BS01 EH5 3.4.23.39 GO:0004190 ... P46925 12614616 PDBbind: -logKd/Ki=7.00, Ki=100nM
    28842 1lf5:A (1.7) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 12213964
    28843 1lf8:A (2.3) BS01 peptide ? GO:0005802 ... Q9NZ52 12032548
    28844 1lf8:B (2.3) BS01 peptide ? GO:0005802 ... Q9NZ52 12032548
    28845 1lf8:C (2.3) BS01 peptide ? GO:0005802 ... Q9NZ52 12032548
    28846 1lf8:D (2.3) BS01 peptide ? GO:0005802 ... Q9NZ52 12032548
    28847 1lf9:A (2.2) BS01 GLC 3.2.1.3 GO:0003824 ... O85672 12614608
    28848 1lf9:A (2.2) BS02 AC1 3.2.1.3 GO:0003824 ... O85672 12614608
    28849 1lf9:B (2.2) BS01 GLC 3.2.1.3 GO:0003824 ... O85672 12614608
    28850 1lf9:B (2.2) BS02 AC1 3.2.1.3 GO:0003824 ... O85672 12614608
    28851 1lfa:A (1.8) BS01 MN ? N/A P20701 7479767
    28852 1lfa:B (1.8) BS01 MN ? N/A P20701 7479767
    28853 1lfd:B (2.1) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9628477
    28854 1lfd:B (2.1) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 9628477
    28855 1lfd:D (2.1) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9628477
    28856 1lfd:D (2.1) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 9628477
    28857 1lfg:A (2.2) BS01 FE 3.4.21.- GO:0001503 ... P02788 15299793
    28858 1lfg:A (2.2) BS02 FE 3.4.21.- GO:0001503 ... P02788 15299793
    28859 1lfg:A (2.2) BS03 CO3 3.4.21.- GO:0001503 ... P02788 15299793
    28860 1lfg:A (2.2) BS04 CO3 3.4.21.- GO:0001503 ... P02788 15299793
    28861 1lfi:A (2.1) BS01 CU 3.4.21.- GO:0001503 ... P02788 1581307
    28862 1lfi:A (2.1) BS02 CU 3.4.21.- GO:0001503 ... P02788 1581307
    28863 1lfi:A (2.1) BS03 CO3 3.4.21.- GO:0001503 ... P02788 1581307
    28864 1lfi:A (2.1) BS04 CO3 3.4.21.- GO:0001503 ... P02788 1581307
    28865 1lfk:A (1.7) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN04 12207020
    28866 1lfl:A (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    28867 1lfl:B (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    28868 1lfl:C (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    28869 1lfl:D (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    28870 1lfl:P (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    28871 1lfl:Q (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    28872 1lfl:R (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    28873 1lfl:S (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    28874 1lfm:A (1.5) BS01 COH ? GO:0005739 ... P81459 12084923
    28875 1lfm:B (1.5) BS01 COH ? GO:0005739 ... P81459 12084923
    28876 1lfo:A (2.3) BS01 OLA ? GO:0003682 ... P02692 9054409 MOAD: Kd~2uM
    PDBbind: -logKd/Ki=6.70, Kd~0.2uM
    BindingDB: Ki=2900nM
    28877 1lfo:A (2.3) BS02 OLA ? GO:0003682 ... P02692 9054409 MOAD: Kd~2uM
    PDBbind: -logKd/Ki=6.70, Kd~0.2uM
    BindingDB: Ki=2900nM
    28878 1lfo:A (2.3) BS03 BEO ? GO:0003682 ... P02692 9054409
    28879 1lfq:A (2.6) BS01 HEM ? GO:0004601 ... P69905 12077435
    28880 1lfq:B (2.6) BS01 HEM ? GO:0004601 ... P68871 12077435
    28881 1lft:A (2.6) BS01 HEM ? GO:0004601 ... P69905 12077435
    28882 1lft:B (2.6) BS01 HEM ? GO:0004601 ... P68871 12077435
    28883 1lfu:P (-1.00) BS01 dna ? GO:0000981 ... P41778 12409300
    28884 1lfu:P (-1.00) BS02 dna ? GO:0000981 ... P41778 12409300
    28885 1lfv:A (2.8) BS01 HEM ? GO:0004601 ... P69905 12077435
    28886 1lfv:B (2.8) BS01 HEM ? GO:0004601 ... P68871 12077435
    28887 1lfw:A (1.8) BS01 ZN 3.4.13.- GO:0005737 ... P45494 12176387
    28888 1lfw:A (1.8) BS02 ZN 3.4.13.- GO:0005737 ... P45494 12176387
    28889 1lfw:A (1.8) BS03 AEP 3.4.13.- GO:0005737 ... P45494 12176387
    28890 1lfy:A (3.3) BS01 HEM ? GO:0004601 ... P69905 12077435
    28891 1lfy:B (3.3) BS01 HEM ? GO:0004601 ... P68871 12077435
    28892 1lfz:A (3.1) BS01 HEM ? GO:0004601 ... P69905 12077435
    28893 1lfz:B (3.1) BS01 HEM ? GO:0004601 ... P68871 12077435
    28894 1lg5:A (1.75) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894
    28895 1lg5:A (1.75) BS02 BME 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894
    28896 1lg6:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894
    28897 1lg6:A (2.2) BS02 SCN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894 BindingDB: Ki=1600000nM
    28898 1lg9:A (2.0) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN04 12207020
    28899 1lga:A (2.03) BS01 CA 1.11.1.14 GO:0000302 ... P49012 8440725
    28900 1lga:A (2.03) BS02 CA 1.11.1.14 GO:0000302 ... P49012 8440725
    28901 1lga:A (2.03) BS03 HEM 1.11.1.14 GO:0000302 ... P49012 8440725
    28902 1lga:B (2.03) BS01 CA 1.11.1.14 GO:0000302 ... P49012 8440725
    28903 1lga:B (2.03) BS02 CA 1.11.1.14 GO:0000302 ... P49012 8440725
    28904 1lga:B (2.03) BS03 HEM 1.11.1.14 GO:0000302 ... P49012 8440725
    28905 1lgb:A (3.3) BS01 MAN ? GO:0005515 ... P04122 8069634
    28906 1lgb:A (3.3) BS02 FUC ? GO:0005515 ... P04122 8069634
    28907 1lgb:A (3.3) BS03 MN ? GO:0005515 ... P04122 8069634
    28908 1lgb:A (3.3) BS04 CA ? GO:0005515 ... P04122 8069634
    28909 1lgb:B (3.3) BS01 MAN ? GO:0005515 ... P12307 8069634
    28910 1lgc:A (2.8) BS01 peptide ? GO:0005515 ... P04122 8069634
    28911 1lgc:A (2.8) BS02 MAN ? GO:0005515 ... P04122 8069634
    28912 1lgc:A (2.8) BS03 CA ? GO:0005515 ... P04122 8069634
    28913 1lgc:A (2.8) BS04 MN ? GO:0005515 ... P04122 8069634
    28914 1lgc:B (2.8) BS01 MAN ? GO:0005515 ... P12307 8069634
    28915 1lgc:C (2.8) BS01 MAN ? GO:0005515 ... P04122 8069634
    28916 1lgc:C (2.8) BS02 FUC ? GO:0005515 ... P04122 8069634
    28917 1lgc:C (2.8) BS03 CA ? GO:0005515 ... P04122 8069634
    28918 1lgc:C (2.8) BS04 MN ? GO:0005515 ... P04122 8069634
    28919 1lgc:D (2.8) BS01 MAN ? GO:0005515 ... P12307 8069634
    28920 1lgc:E (2.8) BS01 MAN ? GO:0005515 ... P04122 8069634
    28921 1lgc:E (2.8) BS02 CA ? GO:0005515 ... P04122 8069634
    28922 1lgc:E (2.8) BS03 MN ? GO:0005515 ... P04122 8069634
    28923 1lgc:F (2.8) BS01 MAN ? GO:0005515 ... P12307 8069634
    28924 1lgd:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894
    28925 1lgd:A (1.9) BS02 BCT 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894 BindingDB: Ki=85000000nM
    28926 1lgf:A (2.2) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN04 12207020
    28927 1lgh:A (2.4) BS01 BCL ? GO:0005886 ... P97253 8736556
    28928 1lgh:A (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    28929 1lgh:A (2.4) BS03 LYC ? GO:0005886 ... P97253 8736556
    28930 1lgh:A (2.4) BS04 BCL ? GO:0005886 ... P97253 8736556
    28931 1lgh:B (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    28932 1lgh:B (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    28933 1lgh:B (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    28934 1lgh:B (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    28935 1lgh:D (2.4) BS01 LYC ? GO:0005886 ... P97253 8736556
    28936 1lgh:D (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    28937 1lgh:D (2.4) BS03 BCL ? GO:0005886 ... P97253 8736556
    28938 1lgh:D (2.4) BS04 LYC ? GO:0005886 ... P97253 8736556
    28939 1lgh:D (2.4) BS05 BCL ? GO:0005886 ... P97253 8736556
    28940 1lgh:E (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    28941 1lgh:E (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    28942 1lgh:E (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    28943 1lgh:E (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    28944 1lgh:G (2.4) BS01 BCL ? GO:0005886 ... P97253 8736556
    28945 1lgh:G (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    28946 1lgh:G (2.4) BS03 LYC ? GO:0005886 ... P97253 8736556
    28947 1lgh:G (2.4) BS04 BCL ? GO:0005886 ... P97253 8736556
    28948 1lgh:H (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    28949 1lgh:H (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    28950 1lgh:H (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    28951 1lgh:H (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    28952 1lgh:J (2.4) BS01 LYC ? GO:0005886 ... P97253 8736556
    28953 1lgh:J (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    28954 1lgh:J (2.4) BS03 BCL ? GO:0005886 ... P97253 8736556
    28955 1lgh:J (2.4) BS04 LYC ? GO:0005886 ... P97253 8736556
    28956 1lgh:J (2.4) BS05 BCL ? GO:0005886 ... P97253 8736556
    28957 1lgh:K (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    28958 1lgh:K (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    28959 1lgh:K (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    28960 1lgh:K (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    28961 1lgn:A (2.8) BS01 CA ? GO:0001849 ... P02743 9217261
    28962 1lgn:A (2.8) BS02 CA ? GO:0001849 ... P02743 9217261
    28963 1lgn:A (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    28964 1lgn:B (2.8) BS01 CA ? GO:0001849 ... P02743 9217261
    28965 1lgn:B (2.8) BS02 CA ? GO:0001849 ... P02743 9217261
    28966 1lgn:B (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    28967 1lgn:C (2.8) BS01 CA ? GO:0001849 ... P02743 9217261
    28968 1lgn:C (2.8) BS02 CA ? GO:0001849 ... P02743 9217261
    28969 1lgn:C (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    28970 1lgn:D (2.8) BS01 CA ? GO:0001849 ... P02743 9217261
    28971 1lgn:D (2.8) BS02 CA ? GO:0001849 ... P02743 9217261
    28972 1lgn:D (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    28973 1lgn:E (2.8) BS01 CA ? GO:0001849 ... P02743 9217261
    28974 1lgn:E (2.8) BS02 CA ? GO:0001849 ... P02743 9217261
    28975 1lgn:E (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    28976 1lgp:A (2.0) BS01 WO4 2.3.2.27 N/A Q96EP1 12121644
    28977 1lgr:A (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28978 1lgr:A (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28979 1lgr:A (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28980 1lgr:B (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28981 1lgr:B (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28982 1lgr:B (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28983 1lgr:C (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28984 1lgr:C (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28985 1lgr:C (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28986 1lgr:D (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28987 1lgr:D (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28988 1lgr:D (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28989 1lgr:E (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28990 1lgr:E (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28991 1lgr:E (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28992 1lgr:F (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28993 1lgr:F (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28994 1lgr:F (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28995 1lgr:G (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28996 1lgr:G (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28997 1lgr:G (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28998 1lgr:H (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28999 1lgr:H (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    29000 1lgr:H (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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