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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27401 1kvo:A (2.0) BS03 OAP 3.1.1.4 GO:0004623 ... P14555 8831753 MOAD: ic50=0.013uM
    PDBbind: -logKd/Ki=7.89, IC50=0.013uM
    BindingDB: IC50=21nM
    27402 1kvo:B (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    27403 1kvo:B (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    27404 1kvo:B (2.0) BS03 OAP 3.1.1.4 GO:0004623 ... P14555 8831753 MOAD: ic50=0.013uM
    BindingDB: IC50=21nM
    27405 1kvo:C (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    27406 1kvo:C (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    27407 1kvo:C (2.0) BS03 OAP 3.1.1.4 GO:0004623 ... P14555 8831753 MOAD: ic50=0.013uM
    BindingDB: IC50=21nM
    27408 1kvo:D (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    27409 1kvo:D (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    27410 1kvo:D (2.0) BS03 OAP 3.1.1.4 GO:0004623 ... P14555 8831753 MOAD: ic50=0.013uM
    BindingDB: IC50=21nM
    27411 1kvo:E (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    27412 1kvo:E (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    27413 1kvo:E (2.0) BS03 OAP 3.1.1.4 GO:0004623 ... P14555 8831753 MOAD: ic50=0.013uM
    BindingDB: IC50=21nM
    27414 1kvo:F (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    27415 1kvo:F (2.0) BS02 CA 3.1.1.4 GO:0004623 ... P14555 8831753
    27416 1kvo:F (2.0) BS03 OAP 3.1.1.4 GO:0004623 ... P14555 8831753 MOAD: ic50=0.013uM
    BindingDB: IC50=21nM
    27417 1kvq:A (2.15) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9271499
    27418 1kvq:A (2.15) BS02 UPG 5.1.3.2 GO:0003978 ... P09147 9271499
    27419 1kvr:A (1.9) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9271499
    27420 1kvr:A (1.9) BS02 UDP 5.1.3.2 GO:0003978 ... P09147 9271499
    27421 1kvs:A (2.15) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9271499
    27422 1kvs:A (2.15) BS02 UPG 5.1.3.2 GO:0003978 ... P09147 9271499
    27423 1kvt:A (2.15) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9271499
    27424 1kvt:A (2.15) BS02 UPG 5.1.3.2 GO:0003978 ... P09147 9271499
    27425 1kvu:A (1.9) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9271498
    27426 1kvu:A (1.9) BS02 UPG 5.1.3.2 GO:0003978 ... P09147 9271498
    27427 1kvw:A (1.95) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089353
    27428 1kvx:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089353
    27429 1kvy:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089353
    27430 1kw0:A (2.5) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 12126628
    27431 1kw0:A (2.5) BS02 H4B 1.14.16.1 GO:0004497 ... P00439 12126628
    27432 1kw0:A (2.5) BS03 TIH 1.14.16.1 GO:0004497 ... P00439 12126628
    27433 1kw1:A (2.2) BS01 MG 4.1.1.85 GO:0000287 ... P39304 11900527
    27434 1kw1:A (2.2) BS02 LG6 4.1.1.85 GO:0000287 ... P39304 11900527
    27435 1kw1:B (2.2) BS01 MG 4.1.1.85 GO:0000287 ... P39304 11900527
    27436 1kw1:B (2.2) BS02 LG6 4.1.1.85 GO:0000287 ... P39304 11900527
    27437 1kw3:B (1.45) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    27438 1kw6:B (1.45) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    27439 1kw6:B (1.45) BS02 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    27440 1kw8:B (2.0) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    27441 1kw8:B (2.0) BS02 NO 1.13.11.39 GO:0003824 ... P17297 12206778
    27442 1kw8:B (2.0) BS03 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    27443 1kw9:B (1.95) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    27444 1kw9:B (1.95) BS02 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    27445 1kwc:B (2.1) BS01 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    27446 1kwf:A (0.94) BS01 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27447 1kwf:A (0.94) BS02 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27448 1kwf:A (0.94) BS03 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27449 1kwf:A (0.94) BS04 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27450 1kwf:A (0.94) BS05 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27451 1kwf:A (0.94) BS06 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27452 1kwg:A (1.6) BS01 ZN 3.2.1.23 GO:0004565 ... O69315 12215416
    27453 1kwh:A (2.0) BS01 CA ? GO:0042597 ... Q9KWT5 11884143
    27454 1kwj:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 11883773
    27455 1kwj:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 11883773
    27456 1kwj:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 11883773
    27457 1kwk:A (2.2) BS01 GAL 3.2.1.23 GO:0004565 ... O69315 12215416
    27458 1kwk:A (2.2) BS02 ZN 3.2.1.23 GO:0004565 ... O69315 12215416
    27459 1kwm:A (1.6) BS01 ZN 3.4.17.2 GO:0004180 ... P15086 12162965
    27460 1kwm:B (1.6) BS01 ZN 3.4.17.2 GO:0004180 ... P15086 12162965
    27461 1kwo:A (3.8) BS01 MG ? GO:0003774 ... P24733 12297624
    27462 1kwo:A (3.8) BS02 AGS ? GO:0003774 ... P24733 12297624
    27463 1kwo:A (3.8) BS03 PDM ? GO:0003774 ... P24733 12297624
    27464 1kwo:B (3.8) BS01 MG ? GO:0005509 ... P13543 12297624
    27465 1kwo:C (3.8) BS01 CA ? GO:0005509 ... P07291 12297624
    27466 1kwq:A (2.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12166932
    27467 1kwq:A (2.6) BS02 SG1 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12166932 PDBbind: -logKd/Ki=9.21, IC50=0.62nM
    BindingDB: IC50=0.62nM
    27468 1kwr:A (2.25) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12166932
    27469 1kwr:A (2.25) BS02 SG2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12166932 MOAD: ic50=0.25uM
    PDBbind: -logKd/Ki=6.60, IC50=0.25uM
    BindingDB: IC50=245.5nM
    27470 1kws:A (2.1) BS01 MN 2.4.1.135 GO:0015018 ... O94766 11950836
    27471 1kws:A (2.1) BS02 UGA 2.4.1.135 GO:0015018 ... O94766 11950836
    27472 1kws:B (2.1) BS01 UGA 2.4.1.135 GO:0015018 ... O94766 11950836
    27473 1kwt:A (1.95) BS01 CA ? N/A P19999 11850428
    27474 1kwt:A (1.95) BS02 CA ? N/A P19999 11850428
    27475 1kwt:A (1.95) BS03 CA ? N/A P19999 11850428
    27476 1kwt:B (1.95) BS01 CA ? N/A P19999 11850428
    27477 1kwt:B (1.95) BS02 CA ? N/A P19999 11850428
    27478 1kwt:B (1.95) BS03 CA ? N/A P19999 11850428
    27479 1kwt:C (1.95) BS01 CA ? N/A P19999 11850428
    27480 1kwt:C (1.95) BS02 CA ? N/A P19999 11850428
    27481 1kwt:C (1.95) BS03 CA ? N/A P19999 11850428
    27482 1kwu:A (1.95) BS01 MMA ? N/A P19999 11850428
    27483 1kwu:A (1.95) BS02 CA ? N/A P19999 11850428
    27484 1kwu:A (1.95) BS03 CA ? N/A P19999 11850428
    27485 1kwu:A (1.95) BS04 CA ? N/A P19999 11850428
    27486 1kwu:B (1.95) BS01 MMA ? N/A P19999 11850428
    27487 1kwu:B (1.95) BS02 CA ? N/A P19999 11850428
    27488 1kwu:B (1.95) BS03 CA ? N/A P19999 11850428
    27489 1kwu:B (1.95) BS04 CA ? N/A P19999 11850428
    27490 1kwu:C (1.95) BS01 MMA ? N/A P19999 11850428
    27491 1kwu:C (1.95) BS02 CA ? N/A P19999 11850428
    27492 1kwu:C (1.95) BS03 CA ? N/A P19999 11850428
    27493 1kwu:C (1.95) BS04 CA ? N/A P19999 11850428
    27494 1kwv:A (2.0) BS01 CA ? N/A P19999 11850428
    27495 1kwv:A (2.0) BS02 CA ? N/A P19999 11850428
    27496 1kwv:A (2.0) BS03 CA ? N/A P19999 11850428
    27497 1kwv:B (2.0) BS01 CA ? N/A P19999 11850428
    27498 1kwv:B (2.0) BS02 CA ? N/A P19999 11850428
    27499 1kwv:B (2.0) BS03 CA ? N/A P19999 11850428
    27500 1kwv:C (2.0) BS01 CA ? N/A P19999 11850428
    27501 1kwv:C (2.0) BS02 CA ? N/A P19999 11850428
    27502 1kwv:C (2.0) BS03 CA ? N/A P19999 11850428
    27503 1kww:A (1.9) BS01 MFU ? N/A P19999 11850428
    27504 1kww:A (1.9) BS02 CA ? N/A P19999 11850428
    27505 1kww:A (1.9) BS03 CA ? N/A P19999 11850428
    27506 1kww:A (1.9) BS04 CA ? N/A P19999 11850428
    27507 1kww:B (1.9) BS01 MFU ? N/A P19999 11850428
    27508 1kww:B (1.9) BS02 CA ? N/A P19999 11850428
    27509 1kww:B (1.9) BS03 CA ? N/A P19999 11850428
    27510 1kww:B (1.9) BS04 CA ? N/A P19999 11850428
    27511 1kww:C (1.9) BS01 MFU ? N/A P19999 11850428
    27512 1kww:C (1.9) BS02 CA ? N/A P19999 11850428
    27513 1kww:C (1.9) BS03 CA ? N/A P19999 11850428
    27514 1kww:C (1.9) BS04 CA ? N/A P19999 11850428
    27515 1kwx:A (2.0) BS01 MFB ? N/A P19999 11850428
    27516 1kwx:A (2.0) BS02 CA ? N/A P19999 11850428
    27517 1kwx:A (2.0) BS03 CA ? N/A P19999 11850428
    27518 1kwx:A (2.0) BS04 CA ? N/A P19999 11850428
    27519 1kwx:B (2.0) BS01 MFB ? N/A P19999 11850428
    27520 1kwx:B (2.0) BS02 CA ? N/A P19999 11850428
    27521 1kwx:B (2.0) BS03 CA ? N/A P19999 11850428
    27522 1kwx:B (2.0) BS04 CA ? N/A P19999 11850428
    27523 1kwx:C (2.0) BS01 MFB ? N/A P19999 11850428
    27524 1kwx:C (2.0) BS02 CA ? N/A P19999 11850428
    27525 1kwx:C (2.0) BS03 CA ? N/A P19999 11850428
    27526 1kwx:C (2.0) BS04 CA ? N/A P19999 11850428
    27527 1kwy:A (2.0) BS01 MAN ? N/A P19999 11850428
    27528 1kwy:A (2.0) BS02 CA ? N/A P19999 11850428
    27529 1kwy:A (2.0) BS03 CA ? N/A P19999 11850428
    27530 1kwy:A (2.0) BS04 CA ? N/A P19999 11850428
    27531 1kwy:B (2.0) BS01 MAN ? N/A P19999 11850428
    27532 1kwy:B (2.0) BS02 CA ? N/A P19999 11850428
    27533 1kwy:B (2.0) BS03 CA ? N/A P19999 11850428
    27534 1kwy:B (2.0) BS04 CA ? N/A P19999 11850428
    27535 1kwy:C (2.0) BS01 MAN ? N/A P19999 11850428
    27536 1kwy:C (2.0) BS02 CA ? N/A P19999 11850428
    27537 1kwy:C (2.0) BS03 CA ? N/A P19999 11850428
    27538 1kwy:C (2.0) BS04 CA ? N/A P19999 11850428
    27539 1kwz:A (1.9) BS01 MAN ? N/A P19999 11850428
    27540 1kwz:A (1.9) BS02 CA ? N/A P19999 11850428
    27541 1kwz:A (1.9) BS03 CA ? N/A P19999 11850428
    27542 1kwz:A (1.9) BS04 CA ? N/A P19999 11850428
    27543 1kwz:B (1.9) BS01 MAN ? N/A P19999 11850428
    27544 1kwz:B (1.9) BS02 CA ? N/A P19999 11850428
    27545 1kwz:B (1.9) BS03 CA ? N/A P19999 11850428
    27546 1kwz:B (1.9) BS04 CA ? N/A P19999 11850428
    27547 1kwz:C (1.9) BS01 MAN ? N/A P19999 11850428
    27548 1kwz:C (1.9) BS02 CA ? N/A P19999 11850428
    27549 1kwz:C (1.9) BS03 CA ? N/A P19999 11850428
    27550 1kwz:C (1.9) BS04 CA ? N/A P19999 11850428
    27551 1kx0:A (2.0) BS01 MAN ? N/A P19999 11850428
    27552 1kx0:A (2.0) BS02 CA ? N/A P19999 11850428
    27553 1kx0:A (2.0) BS03 CA ? N/A P19999 11850428
    27554 1kx0:A (2.0) BS04 CA ? N/A P19999 11850428
    27555 1kx0:B (2.0) BS01 MAN ? N/A P19999 11850428
    27556 1kx0:B (2.0) BS02 CA ? N/A P19999 11850428
    27557 1kx0:B (2.0) BS03 CA ? N/A P19999 11850428
    27558 1kx0:B (2.0) BS04 CA ? N/A P19999 11850428
    27559 1kx0:C (2.0) BS01 MAN ? N/A P19999 11850428
    27560 1kx0:C (2.0) BS02 CA ? N/A P19999 11850428
    27561 1kx0:C (2.0) BS03 CA ? N/A P19999 11850428
    27562 1kx0:C (2.0) BS04 CA ? N/A P19999 11850428
    27563 1kx1:A (2.8) BS01 CA ? N/A P19999 11850428
    27564 1kx1:A (2.8) BS02 CA ? N/A P19999 11850428
    27565 1kx1:A (2.8) BS03 CA ? N/A P19999 11850428
    27566 1kx1:B (2.8) BS01 MAN ? N/A P19999 11850428
    27567 1kx1:B (2.8) BS02 CA ? N/A P19999 11850428
    27568 1kx1:B (2.8) BS03 CA ? N/A P19999 11850428
    27569 1kx1:B (2.8) BS04 CA ? N/A P19999 11850428
    27570 1kx1:C (2.8) BS01 MAN ? N/A P19999 11850428
    27571 1kx1:C (2.8) BS02 CA ? N/A P19999 11850428
    27572 1kx1:C (2.8) BS03 CA ? N/A P19999 11850428
    27573 1kx1:C (2.8) BS04 CA ? N/A P19999 11850428
    27574 1kx1:D (2.8) BS01 CA ? N/A P19999 11850428
    27575 1kx1:D (2.8) BS02 CA ? N/A P19999 11850428
    27576 1kx1:D (2.8) BS03 CA ? N/A P19999 11850428
    27577 1kx1:E (2.8) BS01 MAN ? N/A P19999 11850428
    27578 1kx1:E (2.8) BS02 CA ? N/A P19999 11850428
    27579 1kx1:E (2.8) BS03 CA ? N/A P19999 11850428
    27580 1kx1:E (2.8) BS04 CA ? N/A P19999 11850428
    27581 1kx1:F (2.8) BS01 MAN ? N/A P19999 11850428
    27582 1kx1:F (2.8) BS02 CA ? N/A P19999 11850428
    27583 1kx1:F (2.8) BS03 CA ? N/A P19999 11850428
    27584 1kx1:F (2.8) BS04 CA ? N/A P19999 11850428
    27585 1kx2:A (-1.00) BS01 HEC ? GO:0005506 ... O52685 11955059
    27586 1kx3:A (2.0) BS01 dna ? GO:0000786 ... P84233 12079350
    27587 1kx3:A (2.0) BS02 dna ? GO:0000786 ... P84233 12079350
    27588 1kx3:B (2.0) BS01 dna ? GO:0000786 ... P62799 12079350
    27589 1kx3:B (2.0) BS02 dna ? GO:0000786 ... P62799 12079350
    27590 1kx3:C (2.0) BS01 dna ? GO:0000786 ... P06897 12079350
    27591 1kx3:C (2.0) BS02 dna ? GO:0000786 ... P06897 12079350
    27592 1kx3:D (2.0) BS01 dna ? GO:0000786 ... P02281 12079350
    27593 1kx3:D (2.0) BS02 dna ? GO:0000786 ... P02281 12079350
    27594 1kx3:E (2.0) BS01 dna ? GO:0000786 ... P84233 12079350
    27595 1kx3:E (2.0) BS02 dna ? GO:0000786 ... P84233 12079350
    27596 1kx3:F (2.0) BS01 dna ? GO:0000786 ... P62799 12079350
    27597 1kx3:F (2.0) BS02 dna ? GO:0000786 ... P62799 12079350
    27598 1kx3:G (2.0) BS01 dna ? GO:0000786 ... P06897 12079350
    27599 1kx3:G (2.0) BS02 dna ? GO:0000786 ... P06897 12079350
    27600 1kx3:H (2.0) BS01 dna ? GO:0000786 ... P02281 12079350
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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