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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    26601 1kk4:D (2.7) BS02 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    26602 1kk4:E (2.7) BS01 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    26603 1kk4:E (2.7) BS02 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    26604 1kk4:F (2.7) BS01 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    26605 1kk4:F (2.7) BS02 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    26606 1kk7:A (3.2) BS01 MG ? GO:0003774 ... P24733 12297624
    26607 1kk7:Y (3.2) BS01 MG ? GO:0005509 ... P13543 12297624
    26608 1kk7:Z (3.2) BS01 CA ? GO:0005509 ... P07291 12297624
    26609 1kk8:A (2.3) BS01 MG ? GO:0003774 ... P24733 12297624
    26610 1kk8:A (2.3) BS02 BEF ? GO:0003774 ... P24733 12297624
    26611 1kk8:A (2.3) BS03 ADP ? GO:0003774 ... P24733 12297624
    26612 1kk8:B (2.3) BS01 MG ? GO:0005509 ... P13543 12297624
    26613 1kk8:C (2.3) BS01 CA ? GO:0005509 ... P07291 12297624
    26614 1kkb:A (2.6) BS01 HDA 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    26615 1kkb:A (2.6) BS02 IMP 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    26616 1kkc:A (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    26617 1kkc:B (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    26618 1kkc:X (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    26619 1kkc:Y (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    26620 1kkf:A (2.6) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    26621 1kkf:A (2.6) BS02 HDA 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    26622 1kkf:A (2.6) BS03 IMP 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    26623 1kkj:A (1.93) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26624 1kkk:A (1.6) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26625 1kkk:A (1.6) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26626 1kkk:A (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26627 1kkk:A (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26628 1kkk:A (1.6) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    26629 1kkk:A (1.6) BS06 ASP 3.4.24.27 GO:0004222 ... P00800 N/A
    26630 1kkl:A (2.8) BS01 CA 2.7.11.-
    2.7.4.-    		 GO:0000155 ... Q9RE09 12359875
    26631 1kkl:B (2.8) BS01 CA 2.7.11.-
    2.7.4.-    		 GO:0000155 ... Q9RE09 12359875
    26632 1kkl:C (2.8) BS01 CA 2.7.11.-
    2.7.4.-    		 GO:0000155 ... Q9RE09 12359875
    26633 1kkm:A (2.8) BS01 CA 2.7.11.-
    2.7.4.-    		 GO:0000155 ... Q9RE09 12359875
    26634 1kkm:B (2.8) BS01 CA 2.7.11.-
    2.7.4.-    		 GO:0000155 ... Q9RE09 12359875
    26635 1kkm:C (2.8) BS01 CA 2.7.11.-
    2.7.4.-    		 GO:0000155 ... Q9RE09 12359875
    26636 1kkp:A (1.93) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26637 1kkp:A (1.93) BS02 SER 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26638 1kkq:A (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    26639 1kkq:A (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213 PDBbind: -logKd/Ki=6.62, IC50=0.24uM
    26640 1kkq:B (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    26641 1kkq:B (3.0) BS02 peptide ? GO:0003677 ... Q07869 11845213
    26642 1kkq:B (3.0) BS03 471 ? GO:0003677 ... Q07869 11845213
    26643 1kkq:C (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    26644 1kkq:C (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213
    26645 1kkq:D (3.0) BS01 peptide ? GO:0003677 ... Q07869 11845213
    26646 1kkq:D (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213
    26647 1kkr:A (2.1) BS01 MG 4.3.1.2 GO:0016829 ... O66145 11796115
    26648 1kkr:A (2.1) BS02 2AS 4.3.1.2 GO:0016829 ... O66145 11796115
    26649 1kkr:B (2.1) BS01 2AS 4.3.1.2 GO:0016829 ... O66145 11796115
    26650 1kkr:B (2.1) BS02 MG 4.3.1.2 GO:0016829 ... O66145 11796115
    26651 1kkt:A (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    26652 1kl1:A (1.93) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26653 1kl1:A (1.93) BS02 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26654 1kl2:A (2.7) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26655 1kl2:A (2.7) BS02 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26656 1kl2:A (2.7) BS03 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26657 1kl2:A (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26658 1kl2:A (2.7) BS05 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26659 1kl2:B (2.7) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26660 1kl2:B (2.7) BS02 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26661 1kl2:B (2.7) BS03 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26662 1kl2:B (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26663 1kl2:B (2.7) BS05 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    26664 1kl3:A (1.7) BS01 peptide ? GO:0009374 ... P22629 11910031
    26665 1kl3:B (1.7) BS01 peptide ? GO:0009374 ... P22629 11910031
    26666 1kl3:C (1.7) BS01 peptide ? GO:0009374 ... P22629 11910031
    26667 1kl3:D (1.7) BS01 peptide ? GO:0009374 ... P22629 11910031
    26668 1kl3:D (1.7) BS02 peptide ? GO:0009374 ... P22629 11910031
    26669 1kl5:A (1.8) BS01 peptide ? GO:0009374 ... P22629 11910031
    26670 1kl5:B (1.8) BS01 peptide ? GO:0009374 ... P22629 11910031
    26671 1kl5:C (1.8) BS01 peptide ? GO:0009374 ... P22629 11910031
    26672 1kl5:D (1.8) BS01 peptide ? GO:0009374 ... P22629 11910031
    26673 1kl6:A (1.8) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26674 1kl6:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26675 1kl6:A (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26676 1kl6:A (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26677 1kl6:A (1.8) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    26678 1kl6:A (1.8) BS06 ALA 3.4.24.27 GO:0004222 ... P00800 N/A
    26679 1kl7:A (2.7) BS01 PLP 4.2.3.1 GO:0004795 ... P16120 11756443
    26680 1kl7:B (2.7) BS01 PLP 4.2.3.1 GO:0004795 ... P16120 11756443
    26681 1kl8:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11790782
    26682 1kl9:A (1.9) BS01 ZN ? GO:0003676 ... P05198 11859078
    26683 1klf:B (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    26684 1klf:D (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    26685 1klf:F (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    26686 1klf:H (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    26687 1klf:J (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    26688 1klf:L (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    26689 1klf:N (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    26690 1klf:P (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    26691 1klg:A (2.4) BS01 peptide ? GO:0006955 ... P01903 12051920
    26692 1klg:B (2.4) BS01 peptide ? GO:0006955 ... P01911 12051920
    26693 1kli:H (1.69) BS01 CA 3.4.21.21 GO:0004252 ... P08709 12225752
    26694 1kli:H (1.69) BS02 BEN 3.4.21.21 GO:0004252 ... P08709 12225752
    26695 1klj:H (2.44) BS01 CA 3.4.21.21 GO:0004252 ... P08709 12225752
    26696 1klj:H (2.44) BS02 EDO 3.4.21.21 GO:0004252 ... P08709 12225752
    26697 1klk:A (2.3) BS01 PMD 1.5.1.3 GO:0004146 ... P16184 12037296 MOAD: ic50=0.21uM
    BindingDB: IC50=210nM
    26698 1klk:A (2.3) BS02 NDP 1.5.1.3 GO:0004146 ... P16184 12037296
    26699 1kll:A (1.5) BS01 MC ? N/A O05205 12121648 PDBbind: -logKd/Ki=5.20, Kd=6.3uM
    26700 1klm:A (2.65) BS01 SPP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 9108091
    26701 1kln:A (3.2) BS01 dna 2.7.7.7 GO:0003676 ... P00582 8469987
    26702 1kln:A (3.2) BS02 dna 2.7.7.7 GO:0003676 ... P00582 8469987
    26703 1klq:A (-1.00) BS01 peptide ? GO:0000070 ... Q13257 11804586
    26704 1klr:A (-1.00) BS01 ZN ? N/A P08048 11884136
    26705 1kls:A (-1.00) BS01 ZN ? N/A P08048 11884136
    26706 1klu:A (1.93) BS01 peptide ? GO:0006955 ... P01903 12051920
    26707 1klu:B (1.93) BS01 peptide ? GO:0006955 ... P01911 12051920
    26708 1kly:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26709 1klz:A (1.5) BS01 CL 4.1.1.23 GO:0004590 ... O26232 11900543
    26710 1klz:A (1.5) BS02 U 4.1.1.23 GO:0004590 ... O26232 11900543
    26711 1km0:A (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26712 1km0:A (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26713 1km0:B (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26714 1km0:B (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26715 1km0:C (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26716 1km0:C (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26717 1km0:D (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26718 1km0:D (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26719 1km1:A (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26720 1km1:A (1.6) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26721 1km1:B (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26722 1km1:B (1.6) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26723 1km2:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26724 1km3:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 PDBbind: -logKd/Ki=4.91, Ki=12.4uM
    BindingDB: Ki=12400nM
    26725 1km4:A (1.5) BS01 U 4.1.1.23 GO:0004590 ... O26232 11900543
    26726 1km5:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    26727 1km6:A (1.5) BS01 OMP 4.1.1.23 GO:0004590 ... O26232 11900543
    26728 1kmb:1 (2.1) BS01 CA ? N/A P19999 9033386
    26729 1kmb:1 (2.1) BS02 CA ? N/A P19999 9033386
    26730 1kmb:1 (2.1) BS03 CA ? N/A P19999 9033386
    26731 1kmb:2 (2.1) BS01 CA ? N/A P19999 9033386
    26732 1kmb:2 (2.1) BS02 CA ? N/A P19999 9033386
    26733 1kmb:2 (2.1) BS03 CA ? N/A P19999 9033386
    26734 1kmb:3 (2.1) BS01 CA ? N/A P19999 9033386
    26735 1kmb:3 (2.1) BS02 CA ? N/A P19999 9033386
    26736 1kmb:3 (2.1) BS03 CA ? N/A P19999 9033386
    26737 1kmc:A (2.9) BS01 peptide 3.4.22.60 GO:0003723 ... P55210 N/A
    26738 1kmc:B (2.9) BS01 peptide 3.4.22.60 GO:0003723 ... P55210 N/A
    26739 1kme:A (2.0) BS01 RET ? GO:0005216 ... P02945 11829498
    26740 1kme:B (2.0) BS01 BGC ? GO:0005216 ... P02945 11829498
    26741 1kme:B (2.0) BS02 RET ? GO:0005216 ... P02945 11829498
    26742 1kmf:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 11866509
    26743 1kmg:A (-1.00) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 12237469
    26744 1kmh:A (3.4) BS01 TTX 7.1.2.2 GO:0005524 ... P06450 11904410
    26745 1kmh:B (3.4) BS01 TTX 7.1.2.2 GO:0005524 ... P00825 11904410
    26746 1kmi:Y (2.9) BS01 MG ? GO:0000156 ... P0AE67 12080332
    26747 1kmi:Y (2.9) BS02 BEF ? GO:0000156 ... P0AE67 12080332
    26748 1kmj:A (2.0) BS01 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16    		 GO:0001887 ... P77444 11827487
    26749 1kmk:A (2.2) BS01 SEC 2.8.1.7
    3.13.1.-
    4.4.1.16    		 GO:0001887 ... P77444 11827487
    26750 1kmk:A (2.2) BS02 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16    		 GO:0001887 ... P77444 11827487
    26751 1kmm:A (2.6) BS01 HAM 6.1.1.21 GO:0004812 ... P60906 9207058
    26752 1kmm:B (2.6) BS01 HAM 6.1.1.21 GO:0004812 ... P60906 9207058
    26753 1kmm:C (2.6) BS01 HAM 6.1.1.21 GO:0004812 ... P60906 9207058
    26754 1kmm:D (2.6) BS01 HAM 6.1.1.21 GO:0004812 ... P60906 9207058
    26755 1kmn:A (2.8) BS01 HSO 6.1.1.21 GO:0004812 ... P60906 9207058
    26756 1kmn:A (2.8) BS02 ATP 6.1.1.21 GO:0004812 ... P60906 9207058
    26757 1kmn:B (2.8) BS01 HSO 6.1.1.21 GO:0004812 ... P60906 9207058
    26758 1kmn:B (2.8) BS02 ATP 6.1.1.21 GO:0004812 ... P60906 9207058
    26759 1kmn:C (2.8) BS01 HSO 6.1.1.21 GO:0004812 ... P60906 9207058
    26760 1kmn:C (2.8) BS02 ATP 6.1.1.21 GO:0004812 ... P60906 9207058
    26761 1kmn:D (2.8) BS01 HSO 6.1.1.21 GO:0004812 ... P60906 9207058
    26762 1kmn:D (2.8) BS02 ATP 6.1.1.21 GO:0004812 ... P60906 9207058
    26763 1kmq:A (1.55) BS01 MG 3.6.5.2 GO:0000902 ... P61586 12777804
    26764 1kmq:A (1.55) BS02 MG 3.6.5.2 GO:0000902 ... P61586 12777804
    26765 1kmq:A (1.55) BS03 GNP 3.6.5.2 GO:0000902 ... P61586 12777804
    26766 1kms:A (1.09) BS01 LIH 1.5.1.3 GO:0000900 ... P00374 12096917 BindingDB: IC50=0.98nM
    26767 1kms:A (1.09) BS02 NDP 1.5.1.3 GO:0000900 ... P00374 12096917
    26768 1kmv:A (1.05) BS01 LII 1.5.1.3 GO:0000900 ... P00374 12096917 PDBbind: -logKd/Ki=6.95, IC50=112nM
    26769 1kmv:A (1.05) BS02 NDP 1.5.1.3 GO:0000900 ... P00374 12096917
    26770 1kmy:A (2.0) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    26771 1kmy:A (2.0) BS02 BPY 1.13.11.39 GO:0003824 ... P47228 9857017 MOAD: Kd=8uM
    PDBbind: -logKd/Ki=5.10, Kd=8uM
    26772 1kn1:A (2.2) BS01 CYC ? GO:0009507 ... P59856 10358042
    26773 1kn1:B (2.2) BS01 CYC ? GO:0009507 ... P59857 10358042
    26774 1kn2:H (1.9) BS01 PNE ? N/A P01863 11878955
    26775 1kn2:L (1.9) BS01 ZN ? GO:0046872 ... Q58EU8 11878955
    26776 1kn2:L (1.9) BS02 ZN ? GO:0046872 ... Q58EU8 11878955
    26777 1kn2:L (1.9) BS03 PNE ? GO:0046872 ... Q58EU8 11878955
    26778 1kn4:H (1.9) BS01 PDE ? N/A P01863 11878955
    26779 1kn4:L (1.9) BS01 ZN ? GO:0046872 ... Q58EU8 11878955
    26780 1kn4:L (1.9) BS02 ZN ? GO:0046872 ... Q58EU8 11878955
    26781 1kn4:L (1.9) BS03 PDE ? GO:0046872 ... Q58EU8 11878955
    26782 1kna:A (2.1) BS01 peptide ? N/A P05205 11859155
    26783 1knd:A (1.9) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    26784 1knd:A (1.9) BS02 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    26785 1knd:A (1.9) BS03 CAQ 1.13.11.39 GO:0003824 ... P47228 9857017
    26786 1kne:A (2.4) BS01 peptide ? N/A P05205 11859155
    26787 1knf:A (1.9) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    26788 1knf:A (1.9) BS02 FE2 1.13.11.39 GO:0003824 ... P47228 9857017
    26789 1knf:A (1.9) BS03 MBD 1.13.11.39 GO:0003824 ... P47228 9857017
    26790 1knj:A (2.8) BS01 MN 4.6.1.12 GO:0005515 ... P62617 11786530
    26791 1knj:A (2.8) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 11786530
    26792 1knk:A (2.8) BS01 MN 4.6.1.12 GO:0005515 ... P62617 11786530
    26793 1knm:A (1.2) BS01 GAL 3.2.1.8 N/A P26514 11914070
    26794 1knm:A (1.2) BS02 GAL 3.2.1.8 N/A P26514 11914070
    26795 1kno:A (3.2) BS01 PNP ? GO:0005576 ... P01837 8524836
    26796 1kno:B (3.2) BS01 PNP ? N/A P01863 8524836
    26797 1kno:C (3.2) BS01 PNP ? GO:0005576 ... P01837 8524836
    26798 1kno:D (3.2) BS01 PNP ? N/A P01863 8524836
    26799 1kno:E (3.2) BS01 ZN ? GO:0005576 ... P01837 8524836
    26800 1kno:E (3.2) BS02 PNP ? GO:0005576 ... P01837 8524836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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