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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24401 1juq:D (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    24402 1jus:A (2.84) BS01 RHQ ? GO:0003677 ... P0A0N4 11739955
    24403 1jut:A (2.7) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24404 1jut:A (2.7) BS02 LYD 2.1.1.45 GO:0000287 ... P0A884 11697906 PDBbind: -logKd/Ki=7.32, Ki=47.7nM
    24405 1jut:A (2.7) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24406 1jut:B (2.7) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24407 1jut:B (2.7) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    24408 1jut:B (2.7) BS03 LYD 2.1.1.45 GO:0000287 ... P0A884 11697906 PDBbind: -logKd/Ki=7.32, Ki=47.7nM
    24409 1juv:A (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P04382 N/A
    24410 1juy:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    24411 1juy:A (2.5) BS02 GDP 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    24412 1juy:A (2.5) BS03 H5P 6.3.4.4 GO:0000166 ... P0A7D4 8961938 PDBbind: -logKd/Ki=7.66, Ki=22nM
    24413 1juy:A (2.5) BS04 HDA 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    24414 1jv0:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    24415 1jv0:A (2.0) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    24416 1jv0:B (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    24417 1jv0:B (2.0) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    24418 1jv1:A (1.9) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    24419 1jv1:B (1.9) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    24420 1jv2:A (3.1) BS01 CA ? GO:0001525 ... P06756 11546839
    24421 1jv2:A (3.1) BS02 CA ? GO:0001525 ... P06756 11546839
    24422 1jv2:A (3.1) BS03 CA ? GO:0001525 ... P06756 11546839
    24423 1jv2:A (3.1) BS04 CA ? GO:0001525 ... P06756 11546839
    24424 1jv2:A (3.1) BS05 CA ? GO:0001525 ... P06756 11546839
    24425 1jv2:B (3.1) BS01 CA ? GO:0001618 ... P05106 11546839
    24426 1jv3:A (2.2) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    24427 1jv3:B (2.2) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    24428 1jv4:A (1.75) BS01 TZL ? GO:0003674 ... P11589 11717500
    24429 1jv6:A (2.0) BS01 RET ? GO:0005886 ... P02945 11676543
    24430 1jv7:A (2.25) BS01 RET ? GO:0005216 ... P02945 11676543
    24431 1jvb:A (1.85) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 12051852
    24432 1jvb:A (1.85) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 12051852
    24433 1jvd:A (2.4) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    24434 1jvd:B (2.4) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    24435 1jvg:A (2.3) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    24436 1jvg:B (2.3) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    24437 1jvi:A (2.2) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11601850
    24438 1jvi:A (2.2) BS02 RHC 4.4.1.21 GO:0005506 ... O34667 11601850
    24439 1jvj:A (1.73) BS01 IM2 3.5.2.6 GO:0005515 ... P62593 11870868
    24440 1jvl:A (2.0) BS01 CU ? GO:0005507 ... P00282 11740504
    24441 1jvl:B (2.0) BS01 CU ? GO:0005507 ... P00282 11740504
    24442 1jvn:B (2.1) BS01 POP 3.5.1.2
    4.3.2.10
    GO:0000105 ... P33734 11591353
    24443 1jvo:A (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24444 1jvo:B (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24445 1jvo:C (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24446 1jvo:D (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24447 1jvo:E (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24448 1jvo:F (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24449 1jvo:G (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24450 1jvo:H (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24451 1jvo:I (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24452 1jvo:J (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24453 1jvo:K (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24454 1jvo:L (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24455 1jvp:P (1.53) BS01 89E 2.7.11.22 GO:0000082 ... P24941 11755359
    24456 1jvq:I (2.6) BS01 peptide ? GO:0002020 ... P01008 15342247
    24457 1jvq:I (2.6) BS02 peptide ? GO:0002020 ... P01008 15342247
    24458 1jvs:A (2.2) BS01 SO4 1.1.1.267 GO:0008299 ... P45568 11872159
    24459 1jvs:A (2.2) BS02 NDP 1.1.1.267 GO:0008299 ... P45568 11872159
    24460 1jvs:B (2.2) BS01 SO4 1.1.1.267 GO:0008299 ... P45568 11872159
    24461 1jvs:B (2.2) BS02 NDP 1.1.1.267 GO:0008299 ... P45568 11872159
    24462 1jvu:A (1.78) BS01 C2P 4.6.1.18 GO:0003676 ... P61823 11746706 PDBbind: -logKd/Ki=5.15, Ki=7uM
    BindingDB: Ki=7000nM
    24463 1jvx:A (2.5) BS01 GLC ? GO:0008643 ... P0AEX9 12538909
    24464 1jvx:A (2.5) BS02 GLC ? GO:0008643 ... P0AEX9 12538909
    24465 1jvy:A (1.9) BS01 GLC ? GO:0008643 ... P0AEX9 12538909
    24466 1jvy:A (1.9) BS02 GLC ? GO:0008643 ... P0AEX9 12538909
    24467 1jvz:A (2.6) BS01 CEN 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    24468 1jvz:B (2.6) BS01 CEN 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    24469 1jw0:B (2.5) BS01 GUA 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    24470 1jw1:A (4.0) BS01 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    24471 1jw1:A (4.0) BS02 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    24472 1jw5:A (2.0) BS01 GLC ? GO:0005515 ... P0AEX9 11790091
    24473 1jw5:A (2.0) BS02 GLC ? GO:0005515 ... P0AEX9 11790091
    24474 1jw6:A (1.93) BS01 peptide ? GO:0030246 ... P02866 11732694
    24475 1jw6:A (1.93) BS02 MN ? GO:0030246 ... P02866 11732694
    24476 1jw6:A (1.93) BS03 CA ? GO:0030246 ... P02866 11732694
    24477 1jw8:A (1.3) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 17680690
    24478 1jw9:B (1.7) BS01 ZN 2.7.7.80 GO:0004792 ... P12282 11713534
    24479 1jwa:B (2.9) BS01 ATP 2.7.7.80 GO:0004792 ... P12282 11713534
    24480 1jwb:B (2.1) BS01 ZN 2.7.7.80 GO:0004792 ... P12282 11713534
    24481 1jwb:B (2.1) BS02 AMP 2.7.7.80 GO:0004792 ... P12282 11713534
    24482 1jwg:A (2.0) BS01 peptide ? GO:0005802 ... Q9UJY5 11859376
    24483 1jwg:B (2.0) BS01 peptide ? GO:0005802 ... Q9UJY5 11859376
    24484 1jwh:A (3.1) BS01 ANP 2.7.11.1 GO:0004672 ... P68400 11574463
    24485 1jwh:C (3.1) BS01 ZN ? GO:0000785 ... P67870 11574463
    24486 1jwh:D (3.1) BS01 ZN ? GO:0000785 ... P67870 11574463
    24487 1jwj:A (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    24488 1jwj:A (2.6) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 11669619
    24489 1jwj:B (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    24490 1jwj:B (2.6) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 11669619
    24491 1jwk:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    24492 1jwk:A (2.3) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 11669619
    24493 1jwk:B (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    24494 1jwk:B (2.3) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 11669619
    24495 1jwl:A (4.0) BS01 dna ? GO:0000976 ... P03023 11580238
    24496 1jwl:A (4.0) BS02 NPF ? GO:0000976 ... P03023 11580238
    24497 1jwl:B (4.0) BS01 dna ? GO:0000976 ... P03023 11580238
    24498 1jwl:B (4.0) BS02 dna ? GO:0000976 ... P03023 11580238
    24499 1jwl:B (4.0) BS03 NPF ? GO:0000976 ... P03023 11580238
    24500 1jwl:C (4.0) BS01 NPF ? GO:0000976 ... P03023 11580238
    24501 1jwm:A (2.7) BS01 peptide ? GO:0006955 ... P01903 12962633
    24502 1jwm:B (2.7) BS01 peptide ? GO:0006955 ... P01911 12962633
    24503 1jwn:A (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    24504 1jwn:A (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    24505 1jwn:B (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    24506 1jwn:B (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    24507 1jwn:C (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    24508 1jwn:C (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    24509 1jwn:D (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    24510 1jwn:D (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    24511 1jwq:A (1.8) BS01 ZN 3.5.1.28 GO:0008745 ... Q9LCR3 N/A
    24512 1jws:A (2.6) BS01 peptide ? GO:0006955 ... P01903 12962633
    24513 1jws:B (2.6) BS01 peptide ? GO:0006955 ... P01911 12962633
    24514 1jwt:A (2.5) BS01 BLI 3.4.21.5 GO:0004252 ... P00734 11720865 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    24515 1jwu:A (2.3) BS01 peptide ? GO:0006955 ... P01903 12962633
    24516 1jwu:B (2.3) BS01 peptide ? GO:0006955 ... P01911 12962633
    24517 1jwv:A (1.85) BS01 CB4 3.5.2.6 GO:0005515 ... P62593 12079336
    24518 1jwy:A (2.3) BS01 BGC ? GO:0003774 ... P08799
    Q94464
    11689422
    24519 1jwy:A (2.3) BS02 MG ? GO:0003774 ... P08799
    Q94464
    11689422
    24520 1jwy:A (2.3) BS03 ADP ? GO:0003774 ... P08799
    Q94464
    11689422
    24521 1jwy:A (2.3) BS04 GDP ? GO:0003774 ... P08799
    Q94464
    11689422
    24522 1jwz:A (1.8) BS01 105 3.5.2.6 GO:0005515 ... P62593 12079336
    24523 1jx0:A (2.85) BS01 DFV 5.5.1.6 GO:0009813 ... P28012 11955065
    24524 1jx1:C (2.3) BS01 DFV 5.5.1.6 GO:0009813 ... P28012 11955065
    24525 1jx2:A (2.3) BS01 BGC ? GO:0003774 ... P08799
    Q94464
    11689422
    24526 1jx2:A (2.3) BS02 MG ? GO:0003774 ... P08799
    Q94464
    11689422
    24527 1jx2:A (2.3) BS03 ADP ? GO:0003774 ... P08799
    Q94464
    11689422
    24528 1jx4:A (1.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24529 1jx4:A (1.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24530 1jx4:A (1.7) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24531 1jx4:A (1.7) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24532 1jx4:A (1.7) BS05 ADI 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24533 1jx6:A (1.5) BS01 AI2 ? GO:0005515 ... P54300 11823863
    24534 1jx9:B (2.28) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    24535 1jxa:A (3.1) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 11700065
    24536 1jxa:B (3.1) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 11700065
    24537 1jxd:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11509552
    24538 1jxf:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11509552
    24539 1jxg:A (1.6) BS01 CU1 ? GO:0005507 ... P00299 11679761
    24540 1jxg:B (1.6) BS01 CU1 ? GO:0005507 ... P00299 11679761
    24541 1jxi:A (2.64) BS01 HMH 2.7.1.49
    2.7.4.7
    GO:0003824 ... P55882 11839308
    24542 1jxi:B (2.64) BS01 HMH 2.7.1.49
    2.7.4.7
    GO:0003824 ... P55882 11839308
    24543 1jxj:A (1.99) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    24544 1jxk:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    24545 1jxl:A (2.1) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24546 1jxl:A (2.1) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24547 1jxl:A (2.1) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24548 1jxl:A (2.1) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24549 1jxl:A (2.1) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24550 1jxl:A (2.1) BS06 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24551 1jxl:A (2.1) BS07 DG3 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24552 1jxm:A (2.0) BS01 5GP ? N/A P31016 11779506
    24553 1jxn:A (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    24554 1jxn:A (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    24555 1jxn:A (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    24556 1jxn:B (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    24557 1jxn:B (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    24558 1jxn:B (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    24559 1jxn:C (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    24560 1jxn:C (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    24561 1jxn:C (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    24562 1jxn:D (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    24563 1jxn:D (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    24564 1jxn:D (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    24565 1jxp:A (2.2) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    24566 1jxp:A (2.2) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    24567 1jxp:B (2.2) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    24568 1jxp:B (2.2) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    24569 1jxq:A (2.8) BS01 peptide 3.4.22.62 GO:0004197 ... P55211 11734640
    24570 1jxq:C (2.8) BS01 peptide 3.4.22.62 GO:0004197 ... P55211 11734640
    24571 1jxz:A (1.9) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24572 1jxz:A (1.9) BS02 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24573 1jxz:A (1.9) BS03 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24574 1jxz:B (1.9) BS01 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24575 1jxz:B (1.9) BS02 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24576 1jxz:B (1.9) BS03 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24577 1jxz:C (1.9) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24578 1jxz:C (1.9) BS02 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24579 1jy7:A (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24580 1jy7:B (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24581 1jy7:C (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24582 1jy7:D (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24583 1jy7:P (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24584 1jy7:Q (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24585 1jy7:R (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24586 1jy7:S (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24587 1jy7:U (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24588 1jy7:V (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24589 1jy7:W (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24590 1jy7:X (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24591 1jy8:A (2.5) BS01 ZN 4.6.1.12 GO:0005515 ... P62617 11829504
    24592 1jy8:A (2.5) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 11829504
    24593 1jy8:A (2.5) BS03 CDI 4.6.1.12 GO:0005515 ... P62617 11829504
    24594 1jyb:A (2.2) BS01 FE ? GO:0005506 ... P24931 12459910
    24595 1jyb:A (2.2) BS02 FE ? GO:0005506 ... P24931 12459910
    24596 1jyb:A (2.2) BS03 ZN ? GO:0005506 ... P24931 12459910
    24597 1jyc:A (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24598 1jyc:A (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24599 1jyc:A (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24600 1jyc:B (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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