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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8eqm:a (2.6) BS01 OEX ? GO:0009055 ... B4WKH9 36549647
    2 8eqm:a (2.6) BS02 FE2 ? GO:0009055 ... B4WKH9 36549647
    3 8eqm:a (2.6) BS03 CLA ? GO:0009055 ... B4WKH9 36549647
    4 8eqm:a (2.6) BS04 CLA ? GO:0009055 ... B4WKH9 36549647
    5 8eqm:a (2.6) BS05 PHO ? GO:0009055 ... B4WKH9 36549647
    6 8eqm:a (2.6) BS06 CLA ? GO:0009055 ... B4WKH9 36549647
    7 8eqm:a (2.6) BS07 BCT ? GO:0009055 ... B4WKH9 36549647
    8 8eqm:a (2.6) BS08 CLA ? GO:0009055 ... B4WKH9 36549647
    9 8eqm:a (2.6) BS09 CL7 ? GO:0009055 ... B4WKH9 36549647
    10 8eqm:a (2.6) BS10 PHO ? GO:0009055 ... B4WKH9 36549647
    11 8eqm:d (2.6) BS01 FE2 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    12 8eqm:d (2.6) BS02 CLA 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    13 8eqm:d (2.6) BS03 PHO 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    14 8eqm:d (2.6) BS04 BCT 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    15 8eqm:i (2.6) BS01 CLA ? GO:0005737 ... B4WM03 36549647
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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