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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    21201 5xmv:B (2.16) BS03 8AU 2.1.2.1 GO:0004372 ... A5K8L9 28967982 PDBbind: -logKd/Ki=7.68, IC50=20.9nM
    21202 5xmx:A (2.0) BS01 89L ? GO:0003677 ... Q03181 29103972 PDBbind: -logKd/Ki=7.24, Kd=57nM
    BindingDB: EC50=37nM, Kd=57nM
    21203 5xo2:A (2.201) BS03 SIA ? N/A Q9UKJ1 29046357 PDBbind: -logKd/Ki=4.03, Kd=94uM
    21204 5xo7:A (1.88) BS01 36J ? N/A A0A0D2ILK1 N/A PDBbind: -logKd/Ki=6.36, Kd=0.44uM
    21205 5xof:A (1.963) BS03 SIA ? N/A Q9UKJ1 29046357 PDBbind: -logKd/Ki=4.01, Kd=98uM
    21206 5xpi:A (2.2) BS01 8C3 2.3.2.27 N/A Q96T88 29562800 MOAD: Kd=5.2uM
    PDBbind: -logKd/Ki=5.28, Kd=5.2uM
    21207 5xpl:A (2.05) BS02 8C9 ? GO:0003677 ... P13053 28954197 MOAD: ic50=20nM
    PDBbind: -logKd/Ki=7.70, IC50=20nM
    21208 5xpm:A (2.2) BS02 8C0 ? GO:0003677 ... P13053 28954197 MOAD: ic50=23nM
    PDBbind: -logKd/Ki=7.64, IC50=23nM
    21209 5xpn:A (1.96) BS02 8BO ? GO:0003677 ... P13053 28954197 MOAD: ic50=102nM
    PDBbind: -logKd/Ki=6.99, IC50=102nM
    21210 5xpo:A (2.28) BS02 8BL ? GO:0003677 ... P13053 28954197 MOAD: ic50=84nM
    PDBbind: -logKd/Ki=7.08, IC50=84nM
    21211 5xpp:A (2.85) BS02 8BF ? GO:0003677 ... P13053 28954197 PDBbind: -logKd/Ki=7.44, IC50=36nM
    21212 5xqx:A (2.3) BS01 8CC 2.7.11.22
    2.7.11.23    		 GO:0004672 ... P49336 28802632 PDBbind: -logKd/Ki=6.39, IC50=0.41uM
    BindingDB: IC50=410nM
    21213 5xs0:F (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21214 5xs0:G (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21215 5xs0:H (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21216 5xs0:I (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21217 5xs0:J (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21218 5xs0:N (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21219 5xs0:O (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21220 5xs0:P (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21221 5xs0:Q (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21222 5xs0:R (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21223 5xs0:T (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21224 5xs0:U (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21225 5xs0:V (3.0) BS01 dna ? GO:0000724 ... P43351 30428330 PDBbind: Kd=5.6nM
    21226 5xs2:A (2.04) BS01 8D6 2.7.11.22
    2.7.11.23    		 GO:0004672 ... P49336 28802632 PDBbind: -logKd/Ki=8.30, IC50=0.005uM
    BindingDB: IC50=5nM
    21227 5xs8:A (1.952) BS01 8EX ? GO:0046872 ... D1AWE0 29208901 PDBbind: -logKd/Ki=5.41, Kd=3.86uM
    21228 5xs8:A (1.952) BS02 GCD ? GO:0046872 ... D1AWE0 29208901 PDBbind: -logKd/Ki=5.41, Kd=3.86uM
    21229 5xsr:A (2.3) BS01 8EC 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 29335205 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.69, Kd=20.3nM
    BindingDB: Kd=2.0nM, IC50=17nM
    21230 5xst:A (2.3) BS01 8E6 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 29335205 MOAD: ic50=27nM
    PDBbind: -logKd/Ki=7.57, IC50=27nM
    BindingDB: IC50=27nM
    21231 5xsu:A (2.4) BS01 8E3 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 29335205 MOAD: Kd=180nM
    PDBbind: -logKd/Ki=6.74, Kd=180nM
    BindingDB: Kd=1.8nM, IC50=244nM
    21232 5xv7:A (2.32) BS01 EMH 2.7.11.1 GO:0004672 ... Q96SB4 29478907 MOAD: ic50=11nM
    PDBbind: -logKd/Ki=7.96, IC50=11nM
    BindingDB: IC50=11.0nM
    21233 5xva:A (1.847) BS01 8FU 2.7.11.1 GO:0004672 ... O96013 29190083 MOAD: Ki=0.051uM
    PDBbind: -logKd/Ki=7.29, Ki=0.051uM
    BindingDB: Ki=51nM
    21234 5xvf:A (2.655) BS01 8FR 2.7.11.1 GO:0004672 ... O96013 29190083 PDBbind: -logKd/Ki=6.15, Ki=0.710uM
    BindingDB: Kd=156nM, Ki=710nM
    21235 5xvg:A (2.1) BS01 8FX 2.7.11.1 GO:0004672 ... O96013 29190083 MOAD: Ki=0.009uM
    PDBbind: -logKd/Ki=8.05, Ki=0.009uM
    BindingDB: IC50=11nM, Ki=9nM
    21236 5xvk:A (1.88) BS02 8GC 2.1.1.1 GO:0005737 ... O55239 28720493 MOAD: ic50=9uM
    PDBbind: -logKd/Ki=5.05, IC50=9uM
    21237 5xvq:A (2.29) BS02 8GC ? GO:0005829 ... F7ERX8 28720493 MOAD: ic50=9uM
    PDBbind: -logKd/Ki=5.05, IC50=9uM
    21238 5xvu:A (3.0) BS01 ATP 2.7.11.1 GO:0004672 ... Q8IIR9 29743645 PDBbind: -logKd/Ki=4.65, Kd=22.3uM
    21239 5xw6:B (3.1) BS01 128 N/A GO:0001614 ... N/A 29026074 PDBbind: -logKd/Ki=4.91, Kd=12.26uM
    21240 5xw6:B (3.1) BS02 128 N/A GO:0001614 ... N/A 29026074 PDBbind: -logKd/Ki=4.91, Kd=12.26uM
    21241 5xw6:C (3.1) BS01 128 N/A GO:0001614 ... N/A 29026074 PDBbind: -logKd/Ki=4.91, Kd=12.26uM
    21242 5xw6:C (3.1) BS02 128 N/A GO:0001614 ... N/A 29026074 PDBbind: -logKd/Ki=4.91, Kd=12.26uM
    21243 5xyx:A (2.61) BS01 FTZ 2.7.11.24 GO:0000077 ... Q16539 28945083 PDBbind: -logKd/Ki=4.84, IC50=14.445uM
    BindingDB: IC50=14445nM
    21244 5xyy:A (1.7) BS01 P0F 2.7.11.24 GO:0000077 ... Q16539 28945083 MOAD: ic50=9.221uM
    PDBbind: -logKd/Ki=5.04, IC50=9.221uM
    21245 5xyz:A (2.64) BS01 GYL 2.7.10.2 GO:0004672 ... Q06187 28945083 PDBbind: -logKd/Ki=8.10, IC50=0.008uM
    21246 5xzr:A (2.8) BS01 8J6 3.1.3.48 GO:0000077 ... Q06124 29155585 PDBbind: -logKd/Ki=5.49, IC50=3.27uM
    21247 5y0f:A (1.54) BS01 8JO ? GO:0005324 ... P15090 29775936 MOAD: Ki=0.21uM
    PDBbind: -logKd/Ki=6.68, Ki=0.21uM
    BindingDB: IC50=1690nM, Ki=210nM
    21248 5y0g:A (1.542) BS01 8JL ? GO:0005324 ... P15090 29775936 MOAD: Ki=0.2uM
    PDBbind: -logKd/Ki=6.70, Ki=0.20uM
    BindingDB: IC50=1650nM, Kd=1.4nM, Ki=200nM
    21249 5y0x:A (1.604) BS01 8JR ? GO:0005324 ... P15090 29775936 MOAD: Ki=7.75uM
    PDBbind: -logKd/Ki=5.11, Ki=7.75uM
    BindingDB: Kd=6.0nM, Ki=7750nM
    21250 5y0z:A (2.0) BS02 8K9 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 29685974 MOAD: ic50=0.46uM
    PDBbind: -logKd/Ki=6.34, IC50=0.46uM
    21251 5y12:A (1.75) BS01 8JX ? GO:0005324 ... P15090 29775936 MOAD: Ki=0.59uM
    PDBbind: -logKd/Ki=6.23, Ki=0.59uM
    BindingDB: Ki=590nM
    21252 5y13:A (1.75) BS01 8K0 ? GO:0005324 ... P15090 29775936 MOAD: Ki=1.16uM
    PDBbind: -logKd/Ki=5.94, Ki=1.16uM
    BindingDB: Ki=1160nM
    21253 5y1y:A (1.912) BS01 HNQ ? N/A O60885 29087414 MOAD: ic50=0.98uM
    PDBbind: -logKd/Ki=6.01, IC50=0.98uM
    BindingDB: IC50=980nM
    21254 5y2f:A (2.53) BS03 8L9 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 30374165 PDBbind: -logKd/Ki=5.15, Kd=7.0uM
    BindingDB: EC50=5700nM
    21255 5y3n:A (2.4) BS01 8MF ? GO:0005524 ... Q12931 28816449 MOAD: ic50=0.079uM
    PDBbind: -logKd/Ki=7.10, IC50=0.079uM
    BindingDB: IC50=79nM
    21256 5y3o:A (2.7) BS01 8M9 ? GO:0005524 ... Q12931 28816449 PDBbind: -logKd/Ki=6.86, IC50=0.138uM
    BindingDB: IC50=138nM
    21257 5y48:A (1.7) BS01 URA 3.2.2.22 GO:0000166 ... D9J2T9 30007053 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    21258 5y58:A (2.8) BS01 rna 3.6.4.12 GO:0000723 ... P32807 29290466 PDBbind: Kd=75nM
    21259 5y58:A (2.8) BS02 rna 3.6.4.12 GO:0000723 ... P32807 29290466 PDBbind: Kd=75nM
    21260 5y58:B (2.8) BS01 rna 3.6.4.12 GO:0000723 ... Q04437 29290466 PDBbind: Kd=75nM
    21261 5y58:C (2.8) BS01 rna 3.6.4.12 GO:0000723 ... P32807 29290466 PDBbind: Kd=75nM
    21262 5y58:C (2.8) BS02 rna 3.6.4.12 GO:0000723 ... P32807 29290466 PDBbind: Kd=75nM
    21263 5y58:D (2.8) BS01 rna 3.6.4.12 GO:0000723 ... Q04437 29290466 PDBbind: Kd=75nM
    21264 5y58:E (2.8) BS01 rna 3.6.4.12 GO:0000723 ... P32807 29290466 PDBbind: Kd=75nM
    21265 5y58:E (2.8) BS02 rna 3.6.4.12 GO:0000723 ... P32807 29290466 PDBbind: Kd=75nM
    21266 5y58:F (2.8) BS01 rna 3.6.4.12 GO:0000723 ... Q04437 29290466 PDBbind: Kd=75nM
    21267 5y5n:A (2.3) BS02 8NO 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 28989670 PDBbind: -logKd/Ki=5.76, IC50=1.74uM
    BindingDB: IC50=1000nM
    21268 5y5t:A (1.8) BS01 8OR 2.7.10.2 GO:0004672 ... P43405 29890824 MOAD: ic50=211nM
    PDBbind: -logKd/Ki=6.68, IC50=211nM
    21269 5y5u:A (2.14) BS01 8OU 2.7.10.2 GO:0004672 ... P43405 29890824 MOAD: ic50=17.7nM
    PDBbind: -logKd/Ki=7.75, IC50=17.7nM
    21270 5y62:B (3.0) BS01 5GP ? N/A Q9I4L4 28870806 PDBbind: -logKd/Ki=1.74, Kd=18.4mM
    21271 5y6d:A (2.1) BS03 8PL 3.5.2.6 GO:0016787 ... Q9K2N0 29353720 MOAD: ic50=54.8nM
    PDBbind: -logKd/Ki=7.26, IC50=0.055uM
    21272 5y6e:A (1.8) BS03 8PO 3.5.2.6 GO:0016787 ... Q9K2N0 29353720 MOAD: ic50=13.7nM
    PDBbind: -logKd/Ki=7.86, IC50=0.0137uM
    21273 5y6f:A (2.3) BS01 C2E ? GO:0000166 ... P76010 31836667 PDBbind: -logKd/Ki=6.85, Kd=141nM
    21274 5y6f:A (2.3) BS02 C2E ? GO:0000166 ... P76010 31836667 PDBbind: -logKd/Ki=6.85, Kd=141nM
    21275 5y6g:A (2.3) BS01 C2E ? GO:0035438 ... P76010 31836667 PDBbind: -logKd/Ki=7.00, Kd=99nM
    21276 5y6g:A (2.3) BS02 C2E ? GO:0035438 ... P76010 31836667 PDBbind: -logKd/Ki=7.00, Kd=99nM
    21277 5y6k:A (2.86) BS02 8R6 ? GO:0005515 ... P02787 29323384 PDBbind: -logKd/Ki=6.07, Kd=0.86uM
    21278 5y6k:A (2.86) BS03 8R6 ? GO:0005515 ... P02787 29323384 PDBbind: -logKd/Ki=6.07, Kd=0.86uM
    21279 5y7z:A (2.804) BS01 IRE 2.7.11.1 GO:0004672 ... O14976 30214852 PDBbind: -logKd/Ki=7.81, Kd=15.4nM
    21280 5y80:A (2.5) BS01 IRE 2.7.11.1 GO:0004672 ... O14976 30214852 MOAD: Kd=1.62nM
    PDBbind: -logKd/Ki=8.79, Kd=1.62nM
    21281 5y80:A (2.5) BS02 IRE 2.7.11.1 GO:0004672 ... O14976 30214852 MOAD: Kd=1.62nM
    PDBbind: -logKd/Ki=8.79, Kd=1.62nM
    21282 5y86:A (1.9) BS01 HRM 2.7.12.1 GO:0000242 ... O43781 29634919 MOAD: ic50=0.8uM
    PDBbind: -logKd/Ki=6.10, IC50=0.8uM
    BindingDB: IC50=800nM
    21283 5y8c:A (1.42) BS01 8P9 ? N/A O60885 29566488 MOAD: ic50=0.16uM
    PDBbind: -logKd/Ki=6.80, IC50=0.16uM
    21284 5y8w:A (1.76) BS01 8PU ? N/A O60885 29566488 MOAD: ic50=0.23uM
    PDBbind: -logKd/Ki=6.64, IC50=0.23uM
    21285 5y8y:A (1.87) BS01 8PX ? N/A O60885 29566488 MOAD: Kd=82nM
    PDBbind: -logKd/Ki=7.09, Kd=82nM
    21286 5y8z:A (1.84) BS01 8Q3 ? N/A O60885 29566488 MOAD: ic50=0.62uM
    PDBbind: -logKd/Ki=6.21, IC50=0.62uM
    21287 5y93:A (1.62) BS01 8Q9 ? N/A O60885 29566488 MOAD: ic50=2.27uM
    PDBbind: -logKd/Ki=5.64, IC50=2.27uM
    21288 5y94:A (2.0) BS01 8QC ? N/A O60885 29566488 MOAD: Kd=164nM
    PDBbind: -logKd/Ki=6.79, Kd=164nM
    21289 5y9l:A (2.15) BS01 8R3 3.4.21.117 GO:0001533 ... P49862 29102227 MOAD: ic50=1.9uM
    PDBbind: -logKd/Ki=5.72, IC50=1.9uM
    21290 5ya5:A (1.89) BS01 6TD 2.7.10.1 GO:0004672 ... P08581 29202410 MOAD: ic50=0.19uM
    PDBbind: -logKd/Ki=6.72, Kd=0.19uM
    BindingDB: IC50=190nM
    21291 5yas:A (2.2) BS01 FAC 4.1.2.47 GO:0009694 ... P52704 10548044 MOAD: Ki=0.55mM
    PDBbind: -logKd/Ki=3.26, Ki=0.55mM
    21292 5ybi:A (2.268) BS01 ANP 7.4.2.8 GO:0005524 ... P0A1C1 30013545 PDBbind: -logKd/Ki=3.49, Kd=322.48uM
    21293 5yc8:A (2.5) BS01 3C0 ? GO:0004930 ... P08172
    P0ABE7    		 30420692 MOAD: Kd=6.4nM
    PDBbind: -logKd/Ki=8.19, Kd=6.4nM
    21294 5ye7:A (2.312) BS01 8U0 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50=3431nM
    PDBbind: -logKd/Ki=5.46, IC50=3431nM
    BindingDB: IC50=3431nM
    21295 5ye8:A (1.851) BS01 8U3 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50~1mM
    PDBbind: -logKd/Ki=3.00, IC50~1mM
    BindingDB: IC50=1000000nM
    21296 5ye9:A (1.876) BS01 8U6 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50=355nM
    PDBbind: -logKd/Ki=6.45, IC50=355nM
    BindingDB: IC50=355nM
    21297 5yea:A (1.805) BS01 8U9 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5.0nM
    21298 5yej:A (2.698) BS01 dna ? GO:0000976 ... A0QX69 29852200 PDBbind: Kd=13.8nM
    21299 5yej:B (2.698) BS01 dna ? GO:0000976 ... A0QX69 29852200 PDBbind: Kd=13.8nM
    21300 5yej:B (2.698) BS02 dna ? GO:0000976 ... A0QX69 29852200 PDBbind: Kd=13.8nM
    21301 5yej:C (2.698) BS01 dna ? GO:0000976 ... A0QX69 29852200 PDBbind: Kd=13.8nM
    21302 5yej:C (2.698) BS02 dna ? GO:0000976 ... A0QX69 29852200 PDBbind: Kd=13.8nM
    21303 5yf1:A (2.399) BS02 8V0 2.1.1.22 GO:0008757 ... Q8N4J0 29463897 MOAD: Kd=0.52mM
    PDBbind: -logKd/Ki=3.28, Kd=0.52mM
    21304 5yf1:B (2.399) BS02 8V0 2.1.1.22 GO:0008757 ... Q8N4J0 29463897 MOAD: Kd=0.52mM
    PDBbind: -logKd/Ki=3.28, Kd=0.52mM
    21305 5yfs:A (2.3) BS01 RI2 5.3.1.29 GO:0016853 ... O57947 29382938 MOAD: Kd=13.8uM
    PDBbind: -logKd/Ki=4.86, Kd=13.8uM
    21306 5yft:A (2.21) BS01 RI2 5.3.1.29 GO:0016853 ... O57947 29382938 MOAD: Kd=10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    21307 5yfz:A (2.16) BS02 8UO 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=6.96, IC50=110nM
    21308 5yfz:A (2.16) BS03 8UO 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=6.96, IC50=110nM
    21309 5yfz:B (2.16) BS01 8UO 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=6.96, IC50=110nM
    21310 5yfz:B (2.16) BS03 8UO 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=6.96, IC50=110nM
    21311 5yg2:A (2.2) BS02 N05 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=6.89, IC50=130nM
    21312 5yg2:A (2.2) BS03 N05 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=6.89, IC50=130nM
    21313 5yg2:B (2.2) BS02 N05 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=6.89, IC50=130nM
    21314 5yg2:B (2.2) BS04 N05 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=6.89, IC50=130nM
    21315 5yg3:A (2.4) BS02 8UC 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=7.85, IC50=0.014uM
    21316 5yg3:A (2.4) BS04 8UC 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=7.85, IC50=0.014uM
    21317 5yg3:B (2.4) BS02 8UC 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=7.85, IC50=0.014uM
    21318 5yg3:B (2.4) BS04 8UC 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=7.85, IC50=0.014uM
    21319 5yg4:A (2.3) BS02 8UF 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=7.37, IC50=0.043uM
    21320 5yg4:A (2.3) BS04 8UF 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=7.37, IC50=0.043uM
    21321 5yg4:B (2.3) BS02 8UF 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=7.37, IC50=0.043uM
    21322 5yg4:B (2.3) BS04 8UF 2.1.2.1 GO:0004372 ... A0A1G4H5I1 29655285 PDBbind: -logKd/Ki=7.37, IC50=0.043uM
    21323 5ygi:A (2.177) BS03 T93 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 30270039 PDBbind: -logKd/Ki=7.05, IC50=90nM
    21324 5yh8:A (2.12) BS01 8UX ? GO:0005886 ... Q2FVE7 29581261 MOAD: Kd=167.8nM
    PDBbind: -logKd/Ki=6.78, Kd=167.8nM
    21325 5yhe:A (2.465) BS01 8UX ? GO:0005886 ... Q2FVE7 29581261 MOAD: Kd=203.3nM
    PDBbind: -logKd/Ki=6.69, Kd=203.3nM
    21326 5yhg:A (2.03) BS01 8UX ? GO:0005886 ... Q2FVE7 29581261 MOAD: Kd=952.3nM
    PDBbind: -logKd/Ki=6.02, Kd=952.3nM
    21327 5yhl:A (4.2) BS01 8VL ? GO:0004930 ... P35408 30510193 PDBbind: -logKd/Ki=7.74, Kd=18nM
    21328 5yi2:A (2.6) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21329 5yi2:A (2.6) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21330 5yi2:A (2.6) BS03 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21331 5yi2:B (2.6) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21332 5yi2:B (2.6) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21333 5yi2:E (2.6) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21334 5yi2:E (2.6) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21335 5yi2:E (2.6) BS03 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21336 5yi2:F (2.6) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21337 5yi2:F (2.6) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21338 5yi2:I (2.6) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21339 5yi2:I (2.6) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21340 5yi2:J (2.6) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21341 5yi2:J (2.6) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21342 5yi2:J (2.6) BS03 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21343 5yi2:J (2.6) BS04 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21344 5yi2:M (2.6) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21345 5yi2:M (2.6) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21346 5yi2:N (2.6) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21347 5yi2:N (2.6) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=72nM
    21348 5yi3:A (2.9) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21349 5yi3:A (2.9) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21350 5yi3:A (2.9) BS03 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21351 5yi3:B (2.9) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21352 5yi3:B (2.9) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21353 5yi3:E (2.9) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21354 5yi3:E (2.9) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21355 5yi3:E (2.9) BS03 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21356 5yi3:F (2.9) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21357 5yi3:F (2.9) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21358 5yi3:I (2.9) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21359 5yi3:I (2.9) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21360 5yi3:I (2.9) BS03 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21361 5yi3:J (2.9) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21362 5yi3:J (2.9) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21363 5yi3:M (2.9) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21364 5yi3:M (2.9) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21365 5yi3:M (2.9) BS03 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21366 5yi3:N (2.9) BS01 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21367 5yi3:N (2.9) BS02 dna ? GO:0003677 ... Q9CDU5 29229866 PDBbind: Kd=0.55uM
    21368 5yia:A (2.0) BS01 8V9 3.4.23.39 GO:0004190 ... Q8I6V3 29943906 MOAD: Ki=3nM
    PDBbind: -logKd/Ki=5.52, Ki=3.0uM
    21369 5yib:A (2.15) BS01 8VC 3.4.23.39 GO:0004190 ... Q8I6V3 29943906 MOAD: Ki=3.3nM
    PDBbind: -logKd/Ki=5.48, Ki=3.3uM
    21370 5yic:A (1.9) BS01 8VO 3.4.23.39 GO:0004190 ... Q8I6V3 29943906 MOAD: Ki=1.3nM
    PDBbind: -logKd/Ki=5.89, Ki=1.3uM
    21371 5yid:A (2.1) BS01 K95 3.4.23.39 GO:0004190 ... Q8I6V3 29943906 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=5.40, Ki=4.0uM
    21372 5yie:A (2.1) BS01 8VF 3.4.23.39 GO:0004190 ... Q8I6V3 29943906 MOAD: Ki=5.6nM
    PDBbind: -logKd/Ki=5.25, Ki=5.6uM
    21373 5yij:A (3.18) BS01 NAI ? GO:0106274 ... Q6RCR0 29795342 PDBbind: -logKd/Ki=3.42, Kd=381uM
    21374 5yj3:C (2.845) BS01 dna ? N/A P10074 29134956 PDBbind: Kd=0.17uM
    21375 5yj3:C (2.845) BS02 dna ? N/A P10074 29134956 PDBbind: Kd=0.17uM
    21376 5yj3:D (2.845) BS01 dna ? N/A P10074 29134956 PDBbind: Kd=0.17uM
    21377 5yj3:D (2.845) BS02 dna ? N/A P10074 29134956 PDBbind: Kd=0.17uM
    21378 5yj8:A (1.762) BS01 8W9 ? N/A Q9H7E2 29645362 MOAD: Kd=0.104mM
    PDBbind: -logKd/Ki=3.98, Kd=0.104mM
    21379 5yjb:A (2.96) BS02 8WC 1.14.99.66 GO:0005634 ... O60341 29949906 PDBbind: -logKd/Ki=7.54, Ki=29nM
    BindingDB: Ki=29nM
    21380 5yjf:A (2.49) BS02 8WO 2.1.1.1 GO:0005737 ... P40261 29483571 MOAD: ic50=1.8uM
    PDBbind: -logKd/Ki=5.74, IC50=1.8uM
    21381 5yji:A (1.99) BS02 8WO 2.1.1.1 GO:0005737 ... O55239 29483571 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5.0uM
    21382 5yjk:A (2.4) BS01 8VX 3.4.21.117 GO:0001533 ... P49862 29102227 MOAD: ic50=0.82uM
    PDBbind: -logKd/Ki=6.09, IC50=0.82uM
    BindingDB: IC50=820nM
    21383 5yjm:A (1.9) BS02 8W3 3.4.21.39 GO:0002003 ... P23946 29191554 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.68, Kd=21nM
    BindingDB: Kd=2.1nM, IC50=8.9nM
    21384 5yjp:A (1.8) BS02 8W6 3.4.21.39 GO:0002003 ... P23946 29191554 MOAD: ic50=0.24uM
    PDBbind: -logKd/Ki=6.62, IC50=0.24uM
    BindingDB: IC50=240nM
    21385 5yjy:A (3.4) BS06 8WF 1.6.5.9 GO:0003954 ... P32340 29402945 PDBbind: -logKd/Ki=6.94, IC50=115nM
    21386 5yki:A (2.25) BS01 rna ? GO:0003723 ... Q14671 29490074 PDBbind: Kd=1.5nM
    21387 5ykp:A (1.68) BS04 OVA 3.4.11.18 GO:0006508 ... P53582 30837307 PDBbind: -logKd/Ki=7.05, Ki=0.09uM
    21388 5yl2:A (2.09) BS03 8WU 3.6.5.- GO:0000226 ... Q2XVP4 29691282 PDBbind: -logKd/Ki=4.50, Kd=31.69uM
    21389 5yl2:B (2.09) BS02 8WU ? GO:0000226 ... P02554 29691282 MOAD: Kd=31.69uM
    PDBbind: -logKd/Ki=4.50, Kd=31.69uM
    21390 5ylj:B (2.7) BS02 8X0 ? GO:0000226 ... P02554 29691282 PDBbind: -logKd/Ki=3.86, Kd=139.3uM
    21391 5yls:A (3.0) BS03 Y50 3.6.5.- GO:0000226 ... Q2XVP4 29691282 PDBbind: -logKd/Ki=5.29, Kd=5.13uM
    21392 5yls:B (3.0) BS02 Y50 ? GO:0000226 ... P02554 29691282 PDBbind: -logKd/Ki=5.29, Kd=5.13uM
    21393 5ylt:A (1.69) BS02 C7N 2.1.1.364 GO:0005694 ... Q8WTS6 29882380 MOAD: ic50=0.41uM
    PDBbind: -logKd/Ki=6.39, IC50=0.41uM
    21394 5ylu:A (2.79989) BS01 HKT 7.2.2.19 GO:0000166 ... P19156 29618813 PDBbind: -logKd/Ki=8.62, Ki=2.4nM
    BindingDB: IC50=22.0nM
    21395 5ylv:A (2.79978) BS01 8WX 7.2.2.19 GO:0000166 ... P19156 29618813 PDBbind: -logKd/Ki=6.82, Ki=150nM
    BindingDB: IC50=101nM
    21396 5ymx:A (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... Q1DB04 31560685 PDBbind: -logKd/Ki=6.92, Kd=0.12uM
    21397 5yof:A (1.51) BS01 7HS 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004252 ... Q32ZE1 29526431 PDBbind: -logKd/Ki=5.82, IC50=1.5uM
    21398 5yof:B (1.51) BS01 7HS 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q32ZE1 29526431 PDBbind: -logKd/Ki=5.82, IC50=1.5uM
    21399 5yp5:A (2.65) BS02 4CZ ? GO:0003677 ... P51449 29456799 PDBbind: -logKd/Ki=4.60, IC50>25uM
    BindingDB: IC50=<25119nM, EC50=25nM
    21400 5yp6:A (2.2) BS02 4CX ? GO:0003677 ... P51449 29456799 MOAD: ic50>0.0000316M
    PDBbind: -logKd/Ki=4.60, IC50>25uM
    BindingDB: IC50=<25119nM, EC50=20nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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