Zhanglab forum

Yes, your understanding of the C-score is correct. The C-score provided by the I-TASSER server reflects the confidence in the predicted model, and a higher (more positive) C-score generally indicates a better model. So, choosing model 3 with a C-score geometry dash of -1.20 over model 1 with a lower ...

Check the file named ss.txt in the output folder. This file contains the predicted secondary structure in a format such as H (helix), E (strand), and C (coil). Look at the files named model1.pdb, model2.pdb, etc., where the top 5 models are saved as PDB files. These files are ranked based on their C ...