Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500
| | | | | | | | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCSCCCCCCSSSSSSSSSSCCCCCCCCCCCCSSSSCCCCSSSCCCCSSSSSSSSSSCCCCSSSSSSCCSSCCCCCCSSSSSCCCSSSSSSSSCCCCCCCCSSSSSSSSSCCCSSSSSSSSSSSCCCCCCSCCCCSSSSSCCCCSSSSSSSCCCCCCSSSSSSCCSSCCCCCCCSSSCCCCSSSSCCCCHHHCSSSSSSSSSCCCCSSSSSSSSSSSCCCCCCCCCCCSSSCCCCCSSSSCCCSSSSSSSSSSSCCCSSSSSSCCSSCCCCCCSSSSCCCSSSSCCCCCCCCSSSSSSSSSCCCCCSSSSSSSSSSCCCCSSSSCCCCSSSSCCCSSSSSSSSSSCCCCSSSSSSCCSSCCCCCCSSSSCCSSSSCCCCCCCCSSSSSSSSSCCCCSSSSSSSSSSCCCCCCCCCCCSSSSSCCCCSSSSSSSCCCCCCCCCCSSSSSSSSCCCCCCCSSSSSSCCCCSSSSSSCCCCCCCSSSSSSSSSCCCCCCCCCCSSCC MAPPLRPLARLRPPGMLLRALLLLLLLSPLPGVWCFSELSFVKEPQDVTVTRKDPVVLDCQAHGEVPIKVTWLKNGAKMSENKRIEVLSNGSLYISEVEGRRGEQSDEGFYQCLAMNKYGAILSQKAHLALSTISAFEVQPISTEVHEGGVARFACKISSHPPAVITWEFNRTTLPMTMDRITALPTGVLQIYDVSQRDSGNYRCIAATVAHRRKSMEASLTVIPAKESKSFHTPTIIAGPQNITTSLHQTVVLECMATGNPKPIISWSRLDHKSIDVFNTRVLGNGNLMISDVRLQHAGVYVCRATTPGTRNFTVAMATLTVLAPPSFVEWPESLTRPRAGTARFVCQAEGIPSPKMSWLKNGRKIHSNGRIKMYNSKLVINQIIPEDDAIYQCMAENSQGSILSRARLTVVMSEDRPSAPYNVHAETMSSSAILLAWERPLYNSDKVIAYSVHYMKAEGLNNEEYQVVIGNDTTHYIIDDLEPASNYTFYIVAYMPMGASQMSDHVTQN |
1 | 5k6uA | 0.22 | 0.13 | 4.13 | 0.83 | DEthreader | | ----------------------------------------------HLEG-----NRL----------------RLT---------------IPS--L-----QKLDAG------------------IQVAYMGNFMDTDQRKTVSQG-HAALLNLLPIVSCQPQVTWFREGHKIIP-SSRIAITLENQLVILATTASDAGAYYVQAVNGENKTSPFIHLSVARDTG-THEAMAPIIVVAPGNRSVVAGSETTLECIANARPELSVHWKR-NGVRLT---SGLHYGRRLTITNPTSADTGMYVCEATLRSTFEPARARAFLSIIEPPYFTAEPERILGEVEETMDIPCRAMGVPLPTLQWYKDAVPLSQNPRYKVLPGGLHIQKLSPEDSGIFQCFASNEGGEVQTHTYLDVTN------------------------------------------------------------------------------------------------- |
2 | 3b43A | 0.21 | 0.19 | 6.02 | 2.14 | SPARKS-K | | ----------------------------------AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV--ASLVINKVDHSDVGEYTCKAENSV-GAVASSAVLVIKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNTLQILQTDQSHVGQYNCSASNPLG---TASSSAKLTLSEH---EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTNTATLTVLKVTKGDAGQYTCYASNVA--GKDSCSAQLGVQEPPRFIKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPRKKPH-----PVETLKGADVHLECELQGTPPFQV---SWHKRELRSGKK--YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK |
3 | 6iaaA | 0.27 | 0.25 | 7.68 | 1.11 | MapAlign | | -----------------------------------DFPPRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVDKRSHR-LLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDFRQNPTDVVVAAGEPAILECQPPGHPEPTIYWKKDKVRIDDKEERISI-RGGKL-ISNTRKSDAG-YTCVGTN-VGERDSDPAELTVFERATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNQPNSRCSVSPTGDLTITNIQRSDAGYYICQALTV-A-GSILAKAQLEVTDPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPRDPRATIQEGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTELSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNS-WQTVANHVKTTLYTVRGLRPNTIYLF-VRAINPQGLSDPSPSDPVR |
4 | 6iaaA | 0.23 | 0.22 | 6.98 | 0.52 | CEthreader | | IVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPAILECQPPGHPEPTIYWKKDKVRIDDKEERISIRGGKL------ISNTRKSDAG-YTCVGTNVG-ERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFRCQVQGDPQPTVRWKKDDADLPRGRYDIK----DDYTLRIKKTSTDEGTYCIAENRVGKEASATLTVRAP----------PQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAGSILAKAQLEVTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESGDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSW-QTVANHVKTTLYTVRGLRPNTIYLF-VRAINPQGLSDPSPSDPVR |
5 | 3lafA | 0.31 | 0.23 | 6.97 | 1.74 | MUSTER | | -----------------------------------RRSLHFVSEPSDAVTMRGGNVLLNCSAESDGVPVIKWKKDGLILALDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH--RQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVILRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE--NISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP------------------------------------------------------------------------------------------------ |
6 | 6iaaA | 0.28 | 0.25 | 7.67 | 0.85 | HHsearch | | -----------------------------SRLRQEDFPPRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKSHRLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLDDFRQNPTDVVVAAGEPAILECQPRGHPEPTIYWKKDKVRIDDKEERISI-RGGKL-ISNTRKSDAG-YTCVGTNRVGK--EASATLTVRA--------PPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAGSI--LAKAQLEVTDPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDRATIEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESGDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSV--SNSWQTVAHVKTTLYTVRGLRPNTIYLF-VRAINPQGLSDPSPSDPVR |
7 | 3b43A | 0.19 | 0.18 | 5.70 | 3.28 | FFAS-3D | | -VGEYTCKAE-NSVGAVASSAVLVIKERKL-------PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNV--ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--------QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSSVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK--EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSESIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSD--ISTVVGEEVQLQATIEGAEPISV-----AWFKDKVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV- |
8 | 3b43A | 0.17 | 0.15 | 4.87 | 1.03 | EigenThreader | | ----------------------------------AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVIN--KVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFALKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFN---VQILQTDQSHVGQYNCSASNP-LGTASSSAKLTLSEH-----EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRRPGGNYKMTLVE-NTATLTKVTKGDAGQYTCYASNA----GKDSCSAQLGVEPPRFIKKLEPSIGGSPEIGDYTCEAHNAAGSAQGWHKDKRELRSGKKYKIMSFLTSILNVDSADIGEYQCKASN----DDTCVGSITLK------APPRFVKKLSDISQLQATIEGAEPISV-----AWFKDEIVRESDNIWIS---YSENIATLQAEPANAGKYTCQIKN-------EAGTQECF |
9 | 6iaaA | 0.27 | 0.24 | 7.38 | 6.06 | CNFpred | | ----------------------------------------FRQNPTDVVVAAGEPAILECQPPGHPEPTIYWKKDKVRIDDKEERISIRGGKLMISNTR-----KSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFRCQVQGDPQPTVRWKKDDADLP--RGRYDIKDDYTLRIKKTMSTDEGTYMCIAENRVGK-MEASATLTVRA--------PPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLL-SRCSVSPTGDLTITNIQRSDAGYYICQALTVAGSILAKAQLEVTDV-PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGDPRATIQQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQS--VSNSWQTVANHVTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPV |
10 | 5k6xA | 0.24 | 0.14 | 4.22 | 0.83 | DEthreader | | ----------------------------------------------HLEG-----N-R----------------HLT---------------T-S--L-----DRTHAG------------------VQVAYMGSFEEGEKRQSVNHG-EAAVIRAPRISSFRPQVTWFRDGRKIPP-SSRIAITLENTLVILSTVAPDAGRYYVQAVNGDNKTSQPITLAVEN-V-----PIAPTIIIPPKNTSVVAGTEVTMECVANARPLLHIVWKKD-GAPLS---SGISYNRRLTIANPTVSDAGYYECEAMLRSSVAPVTRGAYLSVLEPPQFVREPEHITAEMEKVVDIPCRAKGVPPPSITWYKDAALVEVLTRFKQRSGGLQISGLLPDDTGMLQCFAHNAAGEAQTSTYLAVTS------------------------------------------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|