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BioLiP

PDB CCD ID: R52
Number of entries in BioLiP: 17
Chemical formula: C5 H11 O8 P
InChI: InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h1,3-5,7-9H,2H2,(H2,10,11,12)/t3-,4+,5-/m0/s1
InChIKey: PPQRONHOSHZGFQ-LMVFSUKVSA-N
SMILES:
SoftwareSMILES
OpenEye OEToolkits 1.5.0C([C@H]([C@H]([C@H](C=O)O)O)O)OP(=O)(O)O
ACDLabs 10.04O=P(O)(O)OCC(O)C(O)C(O)C=O
CACTVS 3.341O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H](O)C=O
CACTVS 3.341O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)C=O
OpenEye OEToolkits 1.5.0C(C(C(C(C=O)O)O)O)OP(=O)(O)O
Name:5-O-phosphono-D-ribose
DrugBank: DB02053
ZINC: ZINC000022116391
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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