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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP

PDB CCD ID: LXE
Number of entries in BioLiP: 4
Chemical formula: C6 H14 N O3
InChI: InChI=1S/C6H13NO3/c7-4-1-5(9)6(10)3(4)2-8/h3-6,8-10H,1-2,7H2/p+1/t3-,4+,5+,6+/m1/s1
InChIKey: XJKPQBOZNVQXOP-VANKVMQKSA-O
SMILES:
SoftwareSMILES
OpenEye OEToolkits 2.0.7C1C(C(C(C1O)O)CO)[NH3+]
CACTVS 3.385[NH3+][CH]1C[CH](O)[CH](O)[CH]1CO
OpenEye OEToolkits 2.0.7C1[C@@H]([C@H]([C@@H]([C@H]1O)O)CO)[NH3+]
CACTVS 3.385[NH3+][C@H]1C[C@H](O)[C@@H](O)[C@@H]1CO
Name:[(1~{S},2~{S},3~{S},4~{S})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]azanium

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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