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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP

PDB CCD ID: J6S
Number of entries in BioLiP: 4
Chemical formula: C12 H9 N O5
InChI: InChI=1S/C12H9NO5/c14-11(12(15)16)4-2-1-3-9-5-7-10(8-6-9)13(17)18/h1-8H,(H,15,16)/b3-1+,4-2+
InChIKey: YFKMPGYOVOFESP-ZPUQHVIOSA-N
SMILES:
SoftwareSMILES
OpenEye OEToolkits 2.0.6c1cc(ccc1C=CC=CC(=O)C(=O)O)[N+](=O)[O-]
OpenEye OEToolkits 2.0.6c1cc(ccc1/C=C/C=C/C(=O)C(=O)O)[N+](=O)[O-]
CACTVS 3.385OC(=O)C(=O)C=CC=Cc1ccc(cc1)[N+]([O-])=O
CACTVS 3.385OC(=O)C(=O)/C=C/C=C/c1ccc(cc1)[N+]([O-])=O
ACDLabs 12.01C(C([C@H]=C\C=C\c1ccc([N+](=O)[O-])cc1)=O)(O)=O
Name:(3E,5E)-6-(4-nitrophenyl)-2-oxohexa-3,5-dienoic acid;
4-nitro-cinnamylidenepyruvate, bound form

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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