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BioLiP

PDB CCD ID: BYY
Number of entries in BioLiP: 4
Chemical formula: C10 H16 N2 O3 Se
InChI: InChI=1S/C10H16N2O3Se/c13-8(14)4-2-1-3-7-9-6(5-16-7)11-10(15)12-9/h6-7,9H,1-5H2,(H,13,14)(H2,11,12,15)/t6-,7-,9-/m0/s1
InChIKey: HVUDXAKXEONARI-ZKWXMUAHSA-N
SMILES:
SoftwareSMILES
ACDLabs 12.01O=C1NC2C(N1)C([Se]C2)CCCCC(O)=O
CACTVS 3.385OC(=O)CCCC[C@@H]1[Se]C[C@@H]2NC(=O)N[C@H]12
OpenEye OEToolkits 2.0.4C1C2C(C([Se]1)CCCCC(=O)O)NC(=O)N2
OpenEye OEToolkits 2.0.4C1[C@H]2[C@@H]([C@@H]([Se]1)CCCCC(=O)O)NC(=O)N2
CACTVS 3.385OC(=O)CCCC[CH]1[Se]C[CH]2NC(=O)N[CH]12
Name:5-[(3aS,4S,6aR)-2-oxohexahydro-1H-selenopheno[3,4-d]imidazol-4-yl]pentanoic acid;
selenobiotin

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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