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BioLiP
>rna
uuccucguggcccaauggucacggcgucuggcuacgaaccagaagauuccagguucaaguccuggcggggaag

The query sequence (length=73) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1f7v:B 73 73 1.0000 1.0000 1.0000 1.96e-33
2 1f7u:B 76 73 1.0000 0.9605 1.0000 1.96e-33 6i7o:n, 7r81:t1, 7r81:u1, 6snt:6, 6sv4:n, 6t4q:6, 6t7i:6
3 7rr5:P 76 73 0.9863 0.9474 0.9863 9.12e-32 7zpq:6, 7zs5:2, 7zuw:6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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