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BioLiP
>rna
ugggguaucgccaagcgguaaggcaccggauugugauuccggcuuuccgagguucgaauccucguaccccagcca

The query sequence (length=75) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v7l:AY 75 75 1.0000 1.0000 1.0000 1.57e-34 4v7l:CY, 4v7m:AY, 4v7m:CY
2 5nwy:M 75 75 0.9733 0.9733 0.9733 3.40e-31 7qg8:M, 7qgh:M, 7qgn:M, 7qgr:M, 4v7l:CW
3 1gtr:B 74 74 0.9600 0.9730 0.9730 1.22e-30 1gts:B, 1o0b:B, 1o0c:B, 1qrs:B, 1qrt:B, 1qru:B, 1qtq:B, 2rd2:B, 2re8:B, 4v7m:CW, 1zjw:B
4 4jxx:B 71 74 0.9333 0.9859 0.9459 3.43e-26
5 1exd:B 73 74 0.9200 0.9452 0.9324 4.43e-25
6 1euy:B 73 74 0.9200 0.9452 0.9324 4.43e-25
7 1euq:B 72 74 0.9200 0.9583 0.9324 4.43e-25
8 4jyz:B 72 74 0.8533 0.8889 0.8649 9.66e-17
9 4jxz:B 71 74 0.8533 0.9014 0.8649 3.47e-16

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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