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BioLiP
>rna
ugacgugcaaaucaaucgaaccaucgcaggaagguggccauggaagucggaauccgcuaaggaguguguaacaacucacc
ugcgcaauuaguaacuaugacuugccucguccgcauaaaccaagaagacccucuggggcggaccacagggauaacuggcu
uguggccaagcguucauagcgacuuuuugauccuucgaugucggcuuguucagaacgugacuggguuuagaacagguuag
uuuuaacgagagg

The query sequence (length=253) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5a8l:A 253 253 1.0000 1.0000 1.0000 7.33e-133
2 6zvk:e2 3920 58 0.2253 0.0145 0.9828 8.56e-23
3 6zm7:L5 3773 58 0.2253 0.0151 0.9828 8.56e-23 6zme:L5, 6zmi:L5, 6zmo:L5
4 7zjx:L5 3732 58 0.2253 0.0153 0.9828 8.56e-23
5 6z6l:L5 3772 58 0.2253 0.0151 0.9828 8.56e-23 6z6m:L5, 6z6n:L5
6 8yoo:L5 3670 58 0.2253 0.0155 0.9828 8.56e-23
7 6y6x:L5 3773 58 0.2253 0.0151 0.9828 8.56e-23
8 8y0x:L5 3658 58 0.2253 0.0156 0.9828 8.56e-23
9 8y0w:L5 3666 58 0.2253 0.0155 0.9828 8.56e-23
10 8xsz:L5 3668 58 0.2253 0.0155 0.9828 8.56e-23
11 6xa1:L5 3510 58 0.2253 0.0162 0.9828 8.56e-23
12 4v6x:A5 4298 58 0.2253 0.0133 0.9828 8.56e-23
13 4v5z:B0 2407 58 0.2253 0.0237 0.9828 8.56e-23
14 7uck:5 3546 58 0.2253 0.0161 0.9828 8.56e-23
15 7tor:A28S 3552 58 0.2253 0.0160 0.9828 8.56e-23
16 7toq:A25S 3649 58 0.2253 0.0156 0.9828 8.56e-23
17 6swa:q 3612 58 0.2253 0.0158 0.9828 8.56e-23
18 8scb:5 3530 58 0.2253 0.0161 0.9828 8.56e-23
19 6qzp:L5 3773 58 0.2253 0.0151 0.9828 8.56e-23 7xnx:L1, 7xny:L1
20 8qoi:L5 3773 58 0.2253 0.0151 0.9828 8.56e-23
21 6p5i:5 3594 58 0.2253 0.0159 0.9828 8.56e-23 6p5j:5, 6p5k:5, 6p5n:5
22 7oyd:5 3358 58 0.2253 0.0170 0.9828 8.56e-23
23 6olz:A2 3643 58 0.2253 0.0156 0.9828 8.56e-23
24 6ole:t 3607 58 0.2253 0.0158 0.9828 8.56e-23 6olf:t, 6oli:t, 6om0:t, 6om7:t
25 7nwg:51 3626 58 0.2253 0.0157 0.9828 8.56e-23
26 6mtb:5 3597 58 0.2253 0.0158 0.9828 8.56e-23 6mtc:5, 6mtd:5, 6mte:5
27 7mdz:5 3541 58 0.2253 0.0161 0.9828 8.56e-23
28 7ls2:A2 3706 58 0.2253 0.0154 0.9828 8.56e-23
29 7ls1:A2 3707 58 0.2253 0.0154 0.9828 8.56e-23
30 5lks:L5 3776 58 0.2253 0.0151 0.9828 8.56e-23 5t2c:A, 4ug0:L5
31 8k2c:L5 3771 58 0.2253 0.0151 0.9828 8.56e-23 8xsx:L5, 8xsy:L5, 8yop:L5
32 3j7r:5 3720 58 0.2253 0.0153 0.9828 8.56e-23
33 3j16:K 155 85 0.3004 0.4903 0.8941 8.56e-23
34 8ir3:2 3541 58 0.2253 0.0161 0.9828 8.56e-23
35 8ir1:2 3369 58 0.2253 0.0169 0.9828 8.56e-23
36 8ipy:2 3485 58 0.2253 0.0164 0.9828 8.56e-23
37 8ipx:2 3475 58 0.2253 0.0164 0.9828 8.56e-23
38 8ipd:2 3485 58 0.2253 0.0164 0.9828 8.56e-23
39 6ip6:1A 3667 58 0.2253 0.0155 0.9828 8.56e-23 6ip8:1A
40 8ink:2 3495 58 0.2253 0.0163 0.9828 8.56e-23
41 8inf:2 3654 58 0.2253 0.0156 0.9828 8.56e-23
42 8ine:2 3537 58 0.2253 0.0161 0.9828 8.56e-23
43 8ifd:1A 3717 58 0.2253 0.0153 0.9828 8.56e-23 8ife:1A, 6ip5:1A
44 8ie3:2 3519 58 0.2253 0.0162 0.9828 8.56e-23
45 8idy:2 3641 58 0.2253 0.0157 0.9828 8.56e-23
46 8idt:2 3524 58 0.2253 0.0162 0.9828 8.56e-23
47 6hcj:51 3635 58 0.2253 0.0157 0.9828 8.56e-23 6hcq:51
48 6hcf:52 3634 58 0.2253 0.0157 0.9828 8.56e-23 6hcm:52
49 8g61:L5 3657 58 0.2253 0.0156 0.9828 8.56e-23
50 8g60:L5 3637 58 0.2253 0.0157 0.9828 8.56e-23
51 8g5z:L5 3687 58 0.2253 0.0155 0.9828 8.56e-23 8g6j:L5
52 8g5y:L5 3721 58 0.2253 0.0153 0.9828 8.56e-23
53 6ftg:u 3662 58 0.2253 0.0156 0.9828 8.56e-23 6fti:u, 6ftj:u, 3j7o:5, 3j7p:5, 3j7q:5, 3j92:5, 3jag:5, 3jah:5, 3jai:5, 7nwi:5, 6r6p:5
54 6frk:5 3658 58 0.2253 0.0156 0.9828 8.56e-23 3jaj:5, 3jan:5
55 8flc:L3 3373 58 0.2253 0.0169 0.9828 8.56e-23
56 8fla:L3 3420 58 0.2253 0.0167 0.9828 8.56e-23 8flb:L3
57 8fl9:L3 3361 58 0.2253 0.0170 0.9828 8.56e-23
58 8fl7:L3 3409 58 0.2253 0.0167 0.9828 8.56e-23
59 8fl6:L3 3405 58 0.2253 0.0167 0.9828 8.56e-23
60 8fl4:L3 3486 58 0.2253 0.0164 0.9828 8.56e-23
61 8fl3:L3 3494 58 0.2253 0.0163 0.9828 8.56e-23
62 8fl2:L3 3495 58 0.2253 0.0163 0.9828 8.56e-23
63 8fl0:L3 1558 58 0.2253 0.0366 0.9828 8.56e-23
64 8fkz:L3 2833 58 0.2253 0.0201 0.9828 8.56e-23
65 8fky:L3 2585 58 0.2253 0.0221 0.9828 8.56e-23
66 8fkx:L3 2250 58 0.2253 0.0253 0.9828 8.56e-23
67 8fkw:L3 2277 58 0.2253 0.0250 0.9828 8.56e-23
68 8fkv:L3 2213 58 0.2253 0.0258 0.9828 8.56e-23
69 8fku:L3 2185 58 0.2253 0.0261 0.9828 8.56e-23
70 8fkt:L3 2125 58 0.2253 0.0268 0.9828 8.56e-23
71 8fks:L3 1824 58 0.2253 0.0312 0.9828 8.56e-23
72 8fkr:L3 1767 58 0.2253 0.0323 0.9828 8.56e-23
73 7f5s:L5 3715 58 0.2253 0.0153 0.9828 8.56e-23
74 9f1b:B5 3706 58 0.2253 0.0154 0.9828 8.56e-23 9f1c:B5, 9f1d:B5
75 8etj:1 1817 58 0.2253 0.0314 0.9828 8.56e-23
76 8eti:1 1579 58 0.2253 0.0361 0.9828 8.56e-23
77 8etg:1 2018 58 0.2253 0.0282 0.9828 8.56e-23
78 8etc:1 2140 58 0.2253 0.0266 0.9828 8.56e-23
79 8esr:1 2143 58 0.2253 0.0266 0.9828 8.56e-23
80 8esq:1 2230 58 0.2253 0.0256 0.9828 8.56e-23
81 6d90:5 3594 58 0.2253 0.0159 0.9828 8.56e-23 6d9j:5
82 7cpv:L5 3541 58 0.2253 0.0161 0.9828 8.56e-23
83 7cpu:L5 3539 58 0.2253 0.0161 0.9828 8.56e-23
84 8btk:B5 3764 58 0.2253 0.0151 0.9828 8.56e-23 7o7y:B5, 7o7z:B5, 7o80:B5, 7o81:B5, 8p2k:B5, 7zjw:L5
85 8bpo:A1 3543 58 0.2253 0.0161 0.9828 8.56e-23 5lzs:5, 5lzt:5, 5lzu:5, 5lzv:5, 5lzw:5, 5lzx:5, 5lzy:5, 5lzz:5, 7nwh:5, 6r5q:5, 6r6g:5, 6r7q:5, 8rjb:K, 8rjc:K, 8rjd:K, 6t59:54, 7tm3:K, 7tut:K
86 8bhf:A2 3603 58 0.2253 0.0158 0.9828 8.56e-23 6sgc:54
87 9bdl:A28S 3557 58 0.2253 0.0160 0.9828 8.56e-23 9bdn:A28S, 9bdp:A28S
88 8b5l:5 3619 58 0.2253 0.0158 0.9828 8.56e-23 8b6c:5
89 5aj0:A2 3612 58 0.2253 0.0158 0.9828 8.56e-23 6gz3:A2, 6gz4:A2, 6gz5:A2, 6olg:A2
90 7a01:e2 3825 58 0.2253 0.0149 0.9828 8.56e-23
91 7r81:A1 3123 58 0.2213 0.0179 0.9655 3.98e-21
92 6qkl:N 1158 62 0.2332 0.0509 0.9516 3.98e-21
93 8q87:B5 3638 58 0.2213 0.0154 0.9655 3.98e-21
94 8pvk:C1 3138 58 0.2213 0.0178 0.9655 3.98e-21
95 8pv8:C1 3085 58 0.2213 0.0182 0.9655 3.98e-21
96 8pv6:C1 3100 58 0.2213 0.0181 0.9655 3.98e-21
97 8pv5:C1 3060 58 0.2213 0.0183 0.9655 3.98e-21
98 8pv4:C1 3136 58 0.2213 0.0179 0.9655 3.98e-21
99 8pv3:C1 2998 58 0.2213 0.0187 0.9655 3.98e-21
100 8pv2:C1 3056 58 0.2213 0.0183 0.9655 3.98e-21
101 8pv1:C1 3078 58 0.2213 0.0182 0.9655 3.98e-21 8pv7:C1, 8pvl:C1
102 7old:1 3192 58 0.2213 0.0175 0.9655 3.98e-21
103 7olc:1 3191 58 0.2213 0.0175 0.9655 3.98e-21 8oo0:1, 7z3n:1, 7z3o:1
104 8ia0:C1 2928 58 0.2213 0.0191 0.9655 3.98e-21
105 8i9z:C1 2787 58 0.2213 0.0201 0.9655 3.98e-21
106 8i9y:C1 2609 58 0.2213 0.0215 0.9655 3.98e-21
107 8i9x:C1 2658 58 0.2213 0.0211 0.9655 3.98e-21
108 8i9w:C1 2163 58 0.2213 0.0259 0.9655 3.98e-21
109 8i9v:C1 2152 58 0.2213 0.0260 0.9655 3.98e-21
110 8i9t:C1 2132 58 0.2213 0.0263 0.9655 3.98e-21
111 5an9:N 1162 62 0.2332 0.0508 0.9516 3.98e-21 5anb:N, 5anc:N
112 7zw0:LA 3217 55 0.2095 0.0165 0.9636 1.85e-19
113 7zuw:5 3163 55 0.2095 0.0168 0.9636 1.85e-19 7zux:5
114 7zs5:1 3248 55 0.2095 0.0163 0.9636 1.85e-19
115 7zrs:5 3185 55 0.2095 0.0166 0.9636 1.85e-19
116 7z34:1 3347 55 0.2095 0.0158 0.9636 1.85e-19
117 6yly:1 2676 55 0.2095 0.0198 0.9636 1.85e-19
118 6ylx:1 2534 55 0.2095 0.0209 0.9636 1.85e-19
119 6ylg:1 3039 55 0.2095 0.0174 0.9636 1.85e-19 6ylh:1
120 6woo:5 3271 55 0.2095 0.0162 0.9636 1.85e-19
121 4v91:1 3203 55 0.2095 0.0165 0.9636 1.85e-19
122 8v87:1 2489 55 0.2095 0.0213 0.9636 1.85e-19
123 8v84:1 1970 55 0.2095 0.0269 0.9636 1.85e-19
124 8v83:1 2015 55 0.2095 0.0263 0.9636 1.85e-19
125 4v8y:B5 3147 55 0.2095 0.0168 0.9636 1.85e-19 4v8z:B5
126 4v7r:B1 3206 55 0.2095 0.0165 0.9636 1.85e-19 4v7r:D1
127 4v7h:B5 3170 55 0.2095 0.0167 0.9636 1.85e-19
128 4v7e:Aa 3391 58 0.2174 0.0162 0.9483 1.85e-19
129 4v6i:DA 3354 55 0.2095 0.0158 0.9636 1.85e-19
130 4v3p:L1 3352 58 0.2174 0.0164 0.9483 1.85e-19
131 6uz7:5 3269 55 0.2095 0.0162 0.9636 1.85e-19
132 7uqz:1 2986 55 0.2095 0.0177 0.9636 1.85e-19 7v08:1
133 7uoo:1 2991 55 0.2095 0.0177 0.9636 1.85e-19 7uqb:1
134 7u0h:1 2722 55 0.2095 0.0195 0.9636 1.85e-19
135 7too:A25S 3194 55 0.2095 0.0166 0.9636 1.85e-19 7top:A25S
136 7rr5:C1 3221 55 0.2095 0.0165 0.9636 1.85e-19 8y0u:C1
137 6ri5:A 3147 55 0.2095 0.0168 0.9636 1.85e-19
138 6r86:1 3260 55 0.2095 0.0163 0.9636 1.85e-19
139 6r84:1 3316 55 0.2095 0.0160 0.9636 1.85e-19 6r87:1
140 7r7a:1 2571 55 0.2095 0.0206 0.9636 1.85e-19
141 6qt0:A 3164 55 0.2095 0.0168 0.9636 1.85e-19
142 6qik:A 3146 55 0.2095 0.0168 0.9636 1.85e-19 6qtz:A, 6rzz:A, 6s05:A
143 6q8y:BQ 3161 55 0.2095 0.0168 0.9636 1.85e-19
144 7pzy:1 3209 55 0.2095 0.0165 0.9636 1.85e-19 7q08:1, 7q0f:1, 7q0p:1, 7q0r:1
145 7osm:25S 3162 55 0.2095 0.0168 0.9636 1.85e-19
146 7osa:25S 3180 55 0.2095 0.0167 0.9636 1.85e-19
147 6oig:5 3243 55 0.2095 0.0163 0.9636 1.85e-19
148 7ohy:1 1689 55 0.2095 0.0314 0.9636 1.85e-19
149 7ohw:1 1639 55 0.2095 0.0323 0.9636 1.85e-19
150 7ohv:1 2141 55 0.2095 0.0248 0.9636 1.85e-19
151 7ohu:1 1692 55 0.2095 0.0313 0.9636 1.85e-19
152 7oht:1 1485 55 0.2095 0.0357 0.9636 1.85e-19
153 7ohs:1 1697 55 0.2095 0.0312 0.9636 1.85e-19
154 7ohr:1 2373 55 0.2095 0.0223 0.9636 1.85e-19
155 7ohq:1 3053 55 0.2095 0.0174 0.9636 1.85e-19
156 7oh3:1 3013 55 0.2095 0.0176 0.9636 1.85e-19
157 7of1:1 2787 55 0.2095 0.0190 0.9636 1.85e-19
158 8oeq:1 3217 55 0.2095 0.0165 0.9636 1.85e-19
159 5obm:5 3134 55 0.2095 0.0169 0.9636 1.85e-19
160 7nrc:LA 3184 55 0.2095 0.0166 0.9636 1.85e-19 7nrd:LA, 6snt:1, 6t4q:C1, 6t7i:C1, 6t7t:C1, 6t83:1b, 6tnu:BQ, 7zpq:5
161 7nac:1 2661 55 0.2095 0.0199 0.9636 1.85e-19
162 6n8o:A 3201 55 0.2095 0.0166 0.9636 1.85e-19
163 6n8m:A 3203 55 0.2095 0.0165 0.9636 1.85e-19 6n8n:A
164 6n8k:1 3201 55 0.2095 0.0166 0.9636 1.85e-19 6n8l:1
165 6n8j:1 3047 55 0.2095 0.0174 0.9636 1.85e-19
166 6m62:1 2972 55 0.2095 0.0178 0.9636 1.85e-19
167 5m1j:14 3295 55 0.2095 0.0161 0.9636 1.85e-19
168 8k82:C1 3204 55 0.2095 0.0165 0.9636 1.85e-19 5t62:A, 5t6r:A
169 8k2d:C1 3188 55 0.2095 0.0166 0.9636 1.85e-19
170 5juu:B 3307 55 0.2095 0.0160 0.9636 1.85e-19
171 5juo:B 3309 55 0.2095 0.0160 0.9636 1.85e-19 5jup:B, 5jus:B, 5jut:B
172 5jcs:x 3394 55 0.2095 0.0156 0.9636 1.85e-19 4v7f:1
173 3j78:2S 3302 55 0.2095 0.0161 0.9636 1.85e-19
174 3j77:2S 3287 55 0.2095 0.0161 0.9636 1.85e-19
175 3j6x:2S 3308 55 0.2095 0.0160 0.9636 1.85e-19 3j6y:2S
176 5it7:5 3270 55 0.2095 0.0162 0.9636 1.85e-19
177 8ip8:RB 3147 58 0.2174 0.0175 0.9483 1.85e-19 8ipa:RB, 8ipb:RB
178 6i7o:BQ 3127 55 0.2095 0.0169 0.9636 1.85e-19 6i7o:YQ, 5ndg:5, 6sv4:BQ, 6sv4:YQ, 6sv4:ZQ, 6t83:Aa, 6z6j:C1, 6z6k:C1
179 6hhq:AR 3147 55 0.2095 0.0168 0.9636 1.85e-19
180 8hfr:1e 3274 55 0.2095 0.0162 0.9636 1.85e-19
181 6hd7:1 3335 55 0.2095 0.0159 0.9636 1.85e-19
182 5h4p:1 3091 55 0.2095 0.0171 0.9636 1.85e-19
183 5gak:1 3165 55 0.2095 0.0167 0.9636 1.85e-19 5mc6:BQ
184 8eub:A1 3198 55 0.2095 0.0166 0.9636 1.85e-19 8evp:A1, 8evq:A1, 8evr:A1, 8evs:A1, 8ewb:A1, 8ewc:A1
185 6em5:1 2438 55 0.2095 0.0217 0.9636 1.85e-19
186 6em1:1 1785 55 0.2095 0.0297 0.9636 1.85e-19
187 6elz:1 2457 55 0.2095 0.0216 0.9636 1.85e-19
188 5dgv:5 3149 55 0.2095 0.0168 0.9636 1.85e-19
189 5dgv:1 3148 55 0.2095 0.0168 0.9636 1.85e-19
190 5dge:5 3150 55 0.2095 0.0168 0.9636 1.85e-19 5fci:5, 5fcj:5, 5i4l:5, 5lyb:5, 5tga:5, 5tgm:5, 4u3m:5, 4u3n:5, 4u3u:5, 4u4n:5, 4u4o:5, 4u4q:5, 4u4r:5, 4u4u:5, 4u4y:5, 4u4z:5, 4u50:5, 4u51:5, 4u52:5, 4u53:5, 4u55:5, 4u56:5, 4u6f:5, 4v88:A5, 4v8t:5
191 5dat:5 3169 55 0.2095 0.0167 0.9636 1.85e-19 5dc3:5, 5dgf:5
192 5dat:1 3149 55 0.2095 0.0168 0.9636 1.85e-19 5dc3:1, 5dge:1, 5dgf:1, 5fci:1, 5fcj:1, 6hhq:1, 5i4l:1, 5lyb:1, 5mei:1, 5mei:AR, 5on6:1, 5on6:AR, 6s47:AA, 5tbw:1, 5tbw:AR, 5tga:1, 5tgm:1, 4u3m:1, 4u3n:1, 4u3u:1, 4u4n:1, 4u4o:1, 4u4q:1, 4u4r:1, 4u4u:1, 4u4y:1, 4u4z:1, 4u50:1, 4u51:1, 4u52:1, 4u53:1, 4u55:1, 4u56:1, 4u6f:1, 4v88:A1
193 8cqw:AS 3227 55 0.2095 0.0164 0.9636 1.85e-19
194 8cqw:1 3208 55 0.2095 0.0165 0.9636 1.85e-19
195 8cq7:AS 3222 55 0.2095 0.0164 0.9636 1.85e-19
196 8cq7:1 3216 55 0.2095 0.0165 0.9636 1.85e-19 8cre:1
197 8cdr:AA 3197 55 0.2095 0.0166 0.9636 1.85e-19 8ceh:AA, 8cg8:AA, 8cgn:AA, 8civ:AA, 8cmj:AA
198 8ccs:AA 3190 55 0.2095 0.0166 0.9636 1.85e-19 8cdl:AA, 8cf5:AA, 8cku:AA
199 8c3a:AS 3229 55 0.2095 0.0164 0.9636 1.85e-19 8cre:AS
200 8c3a:1 3217 55 0.2095 0.0165 0.9636 1.85e-19
201 7btb:1 3058 55 0.2095 0.0173 0.9636 1.85e-19 6ft6:1, 3jct:1, 7ug6:1
202 7bt6:1 2962 55 0.2095 0.0179 0.9636 1.85e-19
203 8bqd:BQ 3299 55 0.2095 0.0161 0.9636 1.85e-19
204 8bn3:1 3143 55 0.2095 0.0169 0.9636 1.85e-19
205 8bip:1 3301 55 0.2095 0.0161 0.9636 1.85e-19 8bjq:1, 8bqx:BQ
206 7b7d:LA 3223 55 0.2095 0.0164 0.9636 1.85e-19 6gq1:1, 6gqb:1, 6gqv:1, 6tb3:BQ, 6xiq:1
207 7azy:E 3161 55 0.2095 0.0168 0.9636 1.85e-19
208 5apn:5 3112 55 0.2095 0.0170 0.9636 1.85e-19 5apo:5
209 8aaf:f 3216 55 0.2095 0.0165 0.9636 1.85e-19 8agt:f, 8agu:f, 8agv:f, 8agw:f, 8agx:f, 8agz:f
210 6xu8:A5 3703 58 0.2134 0.0146 0.9310 8.62e-18
211 6xu6:A5 3707 58 0.2134 0.0146 0.9310 8.62e-18 6xu7:A5
212 4v8m:BA 1847 52 0.1976 0.0271 0.9615 8.62e-18
213 4v6w:A5 3806 58 0.2134 0.0142 0.9310 8.62e-18
214 7ohx:1 1561 43 0.1700 0.0275 1.0000 4.01e-16

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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