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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
>rna
uaccguacugcaaaccgacucaggugggcuaguauauauacucaggccauagaaucaaccauguuaaaggaacucggcaa
aaugcacgcgugaccucggaggaagcguggcuaaaaagacucagcaaauagccgacagcgacuguuuaccaaaaacacag
gauagugcuaacagacguaaauuaagcugcaaaaagcgguuuuauuuuuggauguauacuauccgacgccaaacggcggc
aguaacucuaacuguccuaagguagcgaaauuccuugacuuguaauuggcguccugcaugaauggcggaacgacugucgg
gcugucucuaacauggaaucugugaauuugaaaucuucgugcagaugcgaaggcgcuggcaagggacgaagagacccuau
gcagcuucgcugggugcuaagaguuacucuuauccucaagcuuuucugggacggaugcuuccuaaauaguaacgggagug
aucaaugguacugcuacuuaaauagaaagcagugcuugacuguaagaaccacaguucgagcagggacgcaagucggcauu
aaugacccaggguaacau

The query sequence (length=578) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pkt:7 578 578 1.0000 1.0000 1.0000 0.0
2 6xyw:1 2842 139 0.2024 0.0412 0.8417 2.01e-32
3 8a22:A7 534 182 0.2457 0.2659 0.7802 4.39e-24 8apn:A7, 8apo:A7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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