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BioLiP
>rna
uaaauuauggucaauuguuaguauucauauuaauuuuuuuaaauguuuuaucauuuuauaaagguuuauuuuugaaagau
uuuuuguauaaaauuuuaggaauaguuaauaauaauuuauaauuuugauuagauuguuuuguuaaugcuauuagaugggu
guggaaaaauaaaaaaaauaauuaauauauaucaauaauaaauuaaauuaaucuauuagucagaaauggaugccagccgu
ugcgguaauuucuaugcuuuuaaauauuauacaauuaucauauuaaauuguuaaguguugauuuaaccaauaaaaauaua
aauaauuuuuauuuguuuuuaaacaccauuagguauaugcaaauauaaaauuauaguaauuauaaauuauauuaaaaagg
uauuguugcccaccaauuuuuauaauaaaaauaacgugcaguaauuaauauauuuauaaaaauauauuuuuuuuuuuu

The query sequence (length=478) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hiy:CA 478 478 1.0000 1.0000 1.0000 0.0
2 7aor:2 470 470 0.9812 0.9979 0.9979 0.0
3 6sga:CA 463 477 0.9644 0.9957 0.9665 0.0
4 6hiv:CA 621 394 0.8243 0.6345 1.0000 0.0 6hiw:CA
5 6sgb:CA 609 394 0.8222 0.6453 0.9975 0.0
6 7pub:CA 621 394 0.8222 0.6329 0.9975 0.0
7 7pua:CA 501 329 0.6213 0.5928 0.9027 1.48e-112
8 7ane:2 604 389 0.6778 0.5364 0.8329 7.01e-96
9 3iy8:A 540 279 0.4665 0.4130 0.7993 4.50e-48

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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