>rna
uaaauuauggucaauuguuaguauucauauuaauuuuuuuaaauguuuuaucauuuuauaaagguuuauuuuugaaagau
uuuuuguauaaaauuuuaggaauaguuaauaauaauuuauaauuuugauuagauuguuuuguuaaugcuauuagaugggu
guggaaaaauaaaaaaaauaauuaauauauaucaauaauaaauuaaauuaaucuauuagucagaaauggaugccagccgu
ugcgguaauuucuaugcuuuuaaauauuauacaauuaucauauuaaauuguuaagugcugauuuaaccaauaaaaauaua
aauaauuuuuauuuguuuuuaaacaccauuagguauaugcaaauauaaaauuauaguaauuauaaauuauauuauauuau
auuuauucauauaauuaauaggauaauauuuguaguuuuugauaccaugauaaggauuauaaauugaaaguguuaauauc
auaaucaaaauuuauuauuuauauuaaauauguauguguagauaaaauaagaaauuaaaaagcaccaauuuuuauaauaa
aaauaacgugcaguaauuaauauauuuauaaaaauauauuuuuuuuuuu

The query sequence (length=609) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	6sgb:CA	609	609	1.0000	1.0000	1.0000	0.0
2	7pub:CA	621	620	1.0000	0.9807	0.9823	0.0
3	6hiv:CA	621	620	0.9984	0.9791	0.9806	0.0	6hiw:CA
4	7aor:2	470	394	0.6470	0.8383	1.0000	0.0
5	6hiy:CA	478	394	0.6453	0.8222	0.9975	0.0
6	6sga:CA	463	384	0.6305	0.8294	1.0000	0.0
7	7ane:2	604	616	0.8194	0.8262	0.8101	8.56e-131
8	7pua:CA	501	329	0.4893	0.5948	0.9058	4.07e-114
9	7pua:CA	501	227	0.3432	0.4172	0.9207	1.18e-84
10	6sg9:CA	146	146	0.2397	1.0000	1.0000	5.57e-73
11	7aor:A	143	143	0.2348	1.0000	1.0000	2.59e-71	6hiz:CA
12	3iy8:A	540	279	0.3662	0.4130	0.7993	5.77e-48

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