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BioLiP
>rna
uaaagaugagacgcguuuuagagcuaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaaguggcaccga
gucggugcuu

The query sequence (length=90) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ye9:C 90 90 1.0000 1.0000 1.0000 9.14e-43
2 8ye6:C 92 92 1.0000 0.9783 0.9783 5.50e-40 7z4h:A
3 8t6t:B 95 92 1.0000 0.9474 0.9783 5.50e-40
4 7s4v:B 98 92 1.0000 0.9184 0.9783 5.50e-40 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
5 7s4u:B 97 92 1.0000 0.9278 0.9783 5.50e-40
6 6o0z:B 96 92 1.0000 0.9375 0.9783 5.50e-40 8t6x:B, 7z4i:A, 7z4l:A
7 6o0x:B 98 92 1.0000 0.9184 0.9783 5.50e-40 6o0y:B
8 7z4g:A 91 91 0.9889 0.9780 0.9780 1.98e-39
9 8t6s:B 90 90 0.9778 0.9778 0.9778 7.12e-39 7z4c:A
10 8t6p:B 88 88 0.9556 0.9773 0.9773 9.20e-38 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
11 8t78:B 89 84 0.9111 0.9213 0.9762 1.54e-35
12 8t77:B 89 82 0.8889 0.8989 0.9756 1.99e-34 8t79:B
13 8t6y:B 88 82 0.8889 0.9091 0.9756 1.99e-34
14 6ifo:D 90 80 0.8667 0.8667 0.9750 2.58e-33
15 6ifo:C 88 80 0.8667 0.8864 0.9750 2.58e-33 5xbl:B
16 4oo8:B 97 79 0.8556 0.7938 0.9747 9.27e-33 4oo8:E
17 8g1i:B 98 78 0.8444 0.7755 0.9744 3.33e-32
18 8ygj:B 136 77 0.8333 0.5515 0.9740 1.20e-31
19 5y36:B 99 77 0.8333 0.7576 0.9740 1.20e-31
20 8wus:B 115 77 0.8333 0.6522 0.9740 1.20e-31
21 7s38:R 87 77 0.8333 0.8621 0.9740 1.20e-31
22 7s36:R 87 77 0.8333 0.8621 0.9740 1.20e-31 8t6o:B
23 8kal:E 95 77 0.8333 0.7895 0.9740 1.20e-31
24 8kak:A 94 77 0.8333 0.7979 0.9740 1.20e-31 8kak:E, 8kal:A, 8kam:A
25 8kag:A 98 77 0.8333 0.7653 0.9740 1.20e-31
26 6aeb:A 95 77 0.8333 0.7895 0.9740 1.20e-31 6aeb:E, 6aeg:A
27 8wuv:B 126 76 0.8222 0.5873 0.9737 4.31e-31
28 8wuu:B 111 76 0.8222 0.6667 0.9737 4.31e-31
29 8wut:B 112 76 0.8222 0.6607 0.9737 4.31e-31
30 7z4d:F 77 75 0.8111 0.9481 0.9733 1.55e-30
31 7z4d:A 75 74 0.8000 0.9600 0.9730 5.58e-30
32 4zt0:B 72 71 0.7667 0.9583 0.9718 2.60e-28 4zt0:D, 4zt9:B, 4zt9:D
33 7v59:C 115 63 0.7000 0.5478 1.0000 9.34e-28 7v59:G
34 8fzt:B 69 63 0.7000 0.9130 1.0000 9.34e-28
35 5f9r:A 116 63 0.7000 0.5431 1.0000 9.34e-28 6mcb:B, 6mcc:B, 5vzl:B
36 8kah:I 63 62 0.6889 0.9841 1.0000 3.36e-27 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J
37 6ai6:B 81 63 0.6778 0.7531 0.9683 7.27e-24 5b2r:A, 5b2s:A, 5b2t:A
38 7qr8:A 85 62 0.6667 0.7059 0.9677 2.61e-23
39 7qqw:A 81 62 0.6667 0.7407 0.9677 2.61e-23
40 7qqv:A 85 62 0.6667 0.7059 0.9677 2.61e-23
41 7qqs:A 84 62 0.6667 0.7143 0.9677 2.61e-23 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
42 7zo1:A 85 61 0.6556 0.6941 0.9672 9.40e-23
43 5vw1:C 73 61 0.6556 0.8082 0.9672 9.40e-23
44 6vpc:A 81 68 0.7111 0.7901 0.9412 9.40e-23
45 4un4:A 82 61 0.6556 0.7195 0.9672 9.40e-23 4un5:A
46 7qr1:A 83 61 0.6556 0.7108 0.9672 9.40e-23
47 7qr0:A 82 61 0.6556 0.7195 0.9672 9.40e-23
48 7qqq:A 83 61 0.6556 0.7108 0.9672 9.40e-23
49 7qqp:A 84 61 0.6556 0.7024 0.9672 9.40e-23 7qqr:A
50 7oxa:A 81 61 0.6556 0.7284 0.9672 9.40e-23
51 7ox9:A 84 61 0.6556 0.7024 0.9672 9.40e-23 7qqo:A, 7qr7:A
52 7ox8:A 84 61 0.6556 0.7024 0.9672 9.40e-23
53 7ox7:A 81 61 0.6556 0.7284 0.9672 9.40e-23
54 6k4s:A 80 61 0.6556 0.7375 0.9672 9.40e-23 6k4u:A
55 6k4p:A 82 61 0.6556 0.7195 0.9672 9.40e-23
56 5fw1:A 81 61 0.6556 0.7284 0.9672 9.40e-23 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
57 5fq5:A 83 61 0.6556 0.7108 0.9672 9.40e-23
58 7s37:R 46 31 0.3444 0.6739 1.0000 5.74e-10
59 7s3h:R 30 30 0.3333 1.0000 1.0000 2.06e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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