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BioLiP
>rna
guugaaacagggucagcuugccguagguggcaucgcccucguc

The query sequence (length=43) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8g9u:K 43 43 1.0000 1.0000 1.0000 4.32e-17 8gaf:K, 8gam:K, 8gan:K
2 8g9s:O 42 41 0.9535 0.9762 1.0000 5.59e-16
3 8g9t:O 43 39 0.9070 0.9070 1.0000 7.23e-15

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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