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BioLiP
>rna
guucgcgaaguaacccuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggau
gaaccguuuuacaaagagauuua

The query sequence (length=103) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dco:F 103 103 1.0000 1.0000 1.0000 6.42e-50 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6n:E, 6j6q:E, 5wsg:E, 5ylz:D
2 7b9v:6 102 102 0.9903 1.0000 1.0000 2.31e-49 6bk8:6, 6exn:6, 5lqw:6
3 5y88:D 101 101 0.9806 1.0000 1.0000 8.30e-49
4 5mps:6 99 88 0.8544 0.8889 1.0000 1.40e-41 5mq0:6
5 5lj3:V 97 87 0.8447 0.8969 1.0000 5.03e-41 5lj5:V
6 5tf6:B 71 70 0.6796 0.9859 1.0000 1.42e-31
7 5nrl:6 95 87 0.7864 0.8526 0.9310 2.37e-29
8 5vsu:I 73 69 0.6505 0.9178 0.9710 3.97e-27
9 5zwm:F 99 102 0.8641 0.8990 0.8725 1.85e-25 5zwo:F
10 6aso:I 70 70 0.6408 0.9429 0.9429 2.39e-24
11 5gan:W 80 73 0.6408 0.8250 0.9041 2.41e-19
12 4n0t:B 65 70 0.6117 0.9692 0.9000 3.11e-18
13 5gap:W 56 63 0.5437 1.0000 0.8889 8.72e-14
14 5tf6:D 52 34 0.3301 0.6538 1.0000 1.46e-11
15 3jcm:D 45 48 0.4272 0.9778 0.9167 1.46e-11

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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