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BioLiP
>rna
guucgcgaaauuuuacuucguggacauuuggucaauuugaaacaauacagaaucagcaguuccccugcauaaggaugaac
cgucaaagagauuuguuuu

The query sequence (length=99) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zwm:F 99 99 1.0000 1.0000 1.0000 1.02e-47 5zwo:F
2 5nrl:6 95 87 0.8586 0.8947 0.9770 3.73e-37
3 5mps:6 99 87 0.7980 0.7980 0.9080 1.76e-25 5mq0:6
4 5lj3:V 97 87 0.7980 0.8144 0.9080 1.76e-25 5lj5:V
5 7dco:F 103 102 0.8990 0.8641 0.8725 1.76e-25 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6n:E, 6j6q:E, 5wsg:E, 5ylz:D
6 7b9v:6 102 102 0.8990 0.8725 0.8725 1.76e-25 6bk8:6, 6exn:6, 5lqw:6
7 5y88:D 101 87 0.7879 0.7723 0.8966 6.33e-25
8 5gan:W 80 70 0.6566 0.8125 0.9286 1.37e-21
9 5tf6:B 71 58 0.5455 0.7606 0.9310 3.84e-17
10 5gap:W 56 59 0.5455 0.9643 0.9153 1.79e-15
11 3jcm:D 45 41 0.4040 0.8889 0.9756 2.99e-13

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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