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BioLiP
>rna
gugaugcuucgcguggagaaugacguagcaugcuacg

The query sequence (length=37) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7uoe:T 37 37 1.0000 1.0000 1.0000 7.11e-14
2 7uob:T 36 34 0.9189 0.9444 1.0000 3.31e-12
3 7uob:P 33 33 0.8919 1.0000 1.0000 1.19e-11 7uoe:P
4 8sq9:T 35 33 0.8919 0.9429 1.0000 1.19e-11 7uo9:T
5 8sq9:P 32 32 0.8649 1.0000 1.0000 4.28e-11 7uo9:P
6 8sqj:T 35 34 0.8919 0.9429 0.9706 1.54e-10 8sqk:T
7 8sqj:P 32 31 0.8378 0.9688 1.0000 1.54e-10 8sqk:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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