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BioLiP
>rna
gugagauugugaagggaucucgcagguaucgugagggaaguaugggguaguacgagaggaacucccaugccgugccucua
guuucugggguuugucgaacggcaagugccccgaagccaucgcacggugguucucggcugaacgccucuaagccagaagc
caaucccaagaccagaugcccac

The query sequence (length=183) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8a98:4 183 183 1.0000 1.0000 1.0000 4.19e-94 6az3:4
2 8rxh:L4 184 183 0.9945 0.9891 0.9945 1.95e-92 8rxx:L4
3 8ovj:4 183 183 0.9945 0.9945 0.9945 1.95e-92
4 5t2a:G 183 183 0.9891 0.9891 0.9891 9.08e-91
5 4v8m:BG 182 181 0.9290 0.9341 0.9392 1.20e-74
6 8ova:BG 183 181 0.9290 0.9290 0.9392 1.20e-74 8ove:BG
7 8a3w:4 158 170 0.8634 1.0000 0.9294 1.57e-63
8 3jcs:4 149 159 0.8142 1.0000 0.9371 2.63e-61

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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