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BioLiP
>rna
gucuccguaguguagcgguuaucacguucgccuaacacgcgaaagguccucgguucgaaaccgggcggaaacacca

The query sequence (length=76) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7a5g:j 76 76 1.0000 1.0000 1.0000 4.45e-35 6fti:q, 6hcf:23, 6hcm:23, 3jag:2, 3jah:2, 3jai:2, 5lzs:2, 5lzs:ii, 5lzt:2, 5lzu:2, 5lzv:2, 5lzw:2, 5lzx:2, 5lzz:2, 7nwi:2, 8rjb:q, 8rjd:q, 8scb:2, 7tut:q
2 7nwg:q3 74 76 0.9737 1.0000 0.9737 3.46e-31
3 6frk:2 76 76 0.9605 0.9605 0.9605 4.48e-30 6gz3:Bv, 6gz4:Bv, 6gz5:Bv, 3jaj:3, 3jan:3, 8p2k:AT
4 6ahu:T 72 72 0.9079 0.9583 0.9583 7.49e-28

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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