>rna
gucaauuguuauuauucauauuaauuuuuuuaaaaguuuuuuaauuuuauauuaguuuauuuguuuaaaaaauucauuau
uuaggaauaguuaauaauaauuuauaauucugauuagauuuguuuguuaaugcuauuaaagggguguggaaaaaguguua
aauuuuugauauauuuaaauaauaaauaaaauauaacuuauuagucagaaauggaugccagccguugcgguaauuucuau
gcuuuuaaauauuauacauuuauuuuauaaauuuguuacuauauauuuuuagucaauaaaacuaauaauuauuuuuauuu
guuuuuaaacaccguuugguauaugcaaauaaaaaaugacauuaauuauuaauuauauuauuauauuuauucauuuaagu
caacaauaucuauuuacuguuuuugacaacaugauaaggauuauaaaugguauugcaaauuuuauaaucaaaacuaauuu
auuauauuaaauuagcauguuuagauaaaacaauaaauuuagaagguauuguugcccaccauucuuuguaauaaagacaa
cgugcaguaauuaauguauuuauaaaaauauauuuuuuuuuuuu

The query sequence (length=604) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	7ane:2	604	604	1.0000	1.0000	1.0000	0.0
2	6hiv:CA	621	618	0.8477	0.8245	0.8285	4.93e-153	6hiw:CA
3	7pub:CA	621	618	0.8460	0.8229	0.8269	2.29e-151
4	6sgb:CA	609	617	0.8278	0.8210	0.8104	8.49e-131
5	3iy8:A	540	261	0.4123	0.4611	0.9540	3.12e-115
6	3iy8:A	540	270	0.4056	0.4537	0.9074	6.89e-97
7	6hiy:CA	478	389	0.5364	0.6778	0.8329	8.92e-96
8	7aor:2	470	389	0.5348	0.6872	0.8303	4.15e-94
9	6sga:CA	463	378	0.5182	0.6760	0.8280	1.16e-89
10	7pua:CA	501	266	0.3626	0.4371	0.8233	5.68e-53

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