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BioLiP
>rna
guagcaugcuacgucauucuccuaagaagcug

The query sequence (length=32) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7uo7:T 34 32 1.0000 0.9412 1.0000 3.38e-11
2 7uo7:P 32 32 1.0000 1.0000 1.0000 3.38e-11
3 7uo4:T 36 32 1.0000 0.8889 1.0000 3.38e-11
4 7uo4:P 34 32 1.0000 0.9412 1.0000 3.38e-11
5 6xez:T 36 31 0.9688 0.8611 1.0000 1.22e-10
6 7rdz:T 37 31 0.9688 0.8378 1.0000 1.22e-10 7re0:T, 7re1:T, 7re2:T, 7re3:T, 7re3:U
7 7rdy:T 44 31 0.9688 0.7045 1.0000 1.22e-10
8 7rdx:T 46 31 0.9688 0.6739 1.0000 1.22e-10
9 7rdx:P 34 31 0.9688 0.9118 1.0000 1.22e-10 7rdy:P, 7rdz:P, 7re0:P, 7re1:P, 7re2:P, 7re3:P, 7re3:Q, 6xez:P
10 7krp:T 36 31 0.9688 0.8611 1.0000 1.22e-10
11 7krn:T 43 31 0.9688 0.7209 1.0000 1.22e-10 7kro:T
12 7krn:P 37 31 0.9688 0.8378 1.0000 1.22e-10 7kro:P, 7krp:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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