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BioLiP
>rna
guagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaaguggcaccgagucggugcuu

The query sequence (length=63) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8kah:I 63 63 1.0000 1.0000 1.0000 5.79e-28 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J
2 7z4g:A 91 62 0.9841 0.6813 1.0000 2.08e-27
3 8ye9:C 90 62 0.9841 0.6889 1.0000 2.08e-27
4 8ye6:C 92 62 0.9841 0.6739 1.0000 2.08e-27 7z4h:A
5 7v59:C 115 62 0.9841 0.5391 1.0000 2.08e-27 7v59:G
6 8t78:B 89 62 0.9841 0.6966 1.0000 2.08e-27
7 8t77:B 89 62 0.9841 0.6966 1.0000 2.08e-27 8t79:B
8 8t6y:B 88 62 0.9841 0.7045 1.0000 2.08e-27
9 8t6t:B 95 62 0.9841 0.6526 1.0000 2.08e-27
10 8t6s:B 90 62 0.9841 0.6889 1.0000 2.08e-27 7z4c:A
11 8t6p:B 88 62 0.9841 0.7045 1.0000 2.08e-27 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
12 7s4v:B 98 62 0.9841 0.6327 1.0000 2.08e-27 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
13 7s4u:B 97 62 0.9841 0.6392 1.0000 2.08e-27
14 6o0z:B 96 62 0.9841 0.6458 1.0000 2.08e-27 8t6x:B, 7z4i:A, 7z4l:A
15 6o0x:B 98 62 0.9841 0.6327 1.0000 2.08e-27 6o0y:B
16 6ifo:D 90 62 0.9841 0.6889 1.0000 2.08e-27
17 6ifo:C 88 62 0.9841 0.7045 1.0000 2.08e-27 5xbl:B
18 8g1i:B 98 62 0.9841 0.6327 1.0000 2.08e-27
19 8fzt:B 69 62 0.9841 0.8986 1.0000 2.08e-27
20 5f9r:A 116 62 0.9841 0.5345 1.0000 2.08e-27 6mcb:B, 6mcc:B, 5vzl:B
21 8ygj:B 136 61 0.9683 0.4485 1.0000 7.48e-27
22 5y36:B 99 61 0.9683 0.6162 1.0000 7.48e-27
23 8wus:B 115 61 0.9683 0.5304 1.0000 7.48e-27
24 7s38:R 87 61 0.9683 0.7011 1.0000 7.48e-27
25 7s36:R 87 61 0.9683 0.7011 1.0000 7.48e-27 8t6o:B
26 4oo8:B 97 61 0.9683 0.6289 1.0000 7.48e-27 4oo8:E
27 8kal:E 95 61 0.9683 0.6421 1.0000 7.48e-27
28 8kak:A 94 61 0.9683 0.6489 1.0000 7.48e-27 8kak:E, 8kal:A, 8kam:A
29 8kag:A 98 61 0.9683 0.6224 1.0000 7.48e-27
30 6aeb:A 95 61 0.9683 0.6421 1.0000 7.48e-27 6aeb:E, 6aeg:A
31 8wuv:B 126 60 0.9524 0.4762 1.0000 2.69e-26
32 8wuu:B 111 60 0.9524 0.5405 1.0000 2.69e-26
33 8wut:B 112 60 0.9524 0.5357 1.0000 2.69e-26
34 4zt0:B 72 45 0.7143 0.6250 1.0000 5.87e-18 4zt0:D, 4zt9:B, 4zt9:D
35 7zo1:A 85 45 0.7143 0.5294 1.0000 5.87e-18
36 7z4d:F 77 45 0.7143 0.5844 1.0000 5.87e-18
37 7z4d:A 75 45 0.7143 0.6000 1.0000 5.87e-18
38 5vw1:C 73 45 0.7143 0.6164 1.0000 5.87e-18
39 6vpc:A 81 45 0.7143 0.5556 1.0000 5.87e-18
40 4un4:A 82 45 0.7143 0.5488 1.0000 5.87e-18 4un5:A
41 7qr8:A 85 45 0.7143 0.5294 1.0000 5.87e-18
42 7qr1:A 83 45 0.7143 0.5422 1.0000 5.87e-18
43 7qr0:A 82 45 0.7143 0.5488 1.0000 5.87e-18
44 7qqw:A 81 45 0.7143 0.5556 1.0000 5.87e-18
45 7qqv:A 85 45 0.7143 0.5294 1.0000 5.87e-18
46 7qqs:A 84 45 0.7143 0.5357 1.0000 5.87e-18 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
47 7qqq:A 83 45 0.7143 0.5422 1.0000 5.87e-18
48 7qqp:A 84 45 0.7143 0.5357 1.0000 5.87e-18 7qqr:A
49 7oxa:A 81 45 0.7143 0.5556 1.0000 5.87e-18
50 7ox9:A 84 45 0.7143 0.5357 1.0000 5.87e-18 7qqo:A, 7qr7:A
51 7ox8:A 84 45 0.7143 0.5357 1.0000 5.87e-18
52 7ox7:A 81 45 0.7143 0.5556 1.0000 5.87e-18
53 6k4s:A 80 45 0.7143 0.5625 1.0000 5.87e-18 6k4u:A
54 6k4p:A 82 45 0.7143 0.5488 1.0000 5.87e-18
55 5fw1:A 81 45 0.7143 0.5556 1.0000 5.87e-18 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
56 5fq5:A 83 45 0.7143 0.5422 1.0000 5.87e-18
57 6ai6:B 81 45 0.7143 0.5556 1.0000 5.87e-18 5b2r:A, 5b2s:A, 5b2t:A
58 7s37:R 46 31 0.4921 0.6739 1.0000 3.56e-10
59 7s3h:R 30 30 0.4762 1.0000 1.0000 1.28e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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