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BioLiP
>rna
ggugggguucccgagcggccaaagggagcagacuguaaaucugccgucaucgacuucgaagguucgaauccuucccccac
cacca

The query sequence (length=85) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6n1d:BATN 85 85 1.0000 1.0000 1.0000 5.11e-40 4v8d:AB, 4v8d:AD, 4v8d:CB, 4v8d:CD, 4v8e:BB, 4v8e:BD, 4v8e:DB, 4v8e:DD, 4v8f:BB, 4v8f:BD, 4v8f:CB, 4v8f:CD, 4wq1:1K, 4wr6:1K, 4wr6:3K, 4wr6:3L, 4wra:1K, 4wra:3K, 4wra:3L, 4wu1:3K, 4wu1:3L, 4wzd:3K, 4wzd:3L
2 6k0b:U 83 83 0.9647 0.9880 0.9880 3.08e-37 6k0b:V
3 4wu1:2K 82 85 0.9647 1.0000 0.9647 6.66e-34 4wzd:2K
4 4wu1:2L 78 85 0.9176 1.0000 0.9176 4.04e-26 4wzd:2L
5 4wq1:3L 75 85 0.8824 1.0000 0.8824 1.46e-20
6 4wq1:3K 74 85 0.8706 1.0000 0.8706 2.45e-18 4wq1:1L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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