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BioLiP
>rna
ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucggcaguucgauucugcccgagaccacca

The query sequence (length=76) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7p6z:7 76 76 1.0000 1.0000 1.0000 4.45e-35 7pah:7, 7pah:8, 7pai:7, 7paj:6, 7paj:7, 7paj:8, 7pak:6, 7pak:7, 7pal:6, 7pal:7, 7pam:8, 7pan:7, 7pan:8, 7pao:8, 7paq:7, 7paq:8, 7par:7, 7par:8, 7ph9:7, 7pha:6, 7pha:7, 7phb:6, 7phb:7, 7phc:8, 7pi8:7, 7pi9:6, 7pi9:7, 7pia:7, 7pia:8, 7pib:7, 7pib:8, 7pic:8, 7pio:7, 7pip:6, 7pip:7, 7piq:7, 7pir:8, 7pis:6, 7pis:8, 7pit:7, 7pit:8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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