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BioLiP
>rna
gggucguuagcucauggagcaguugacuuuuaaucaauugcgcagguucgaauccugcacgacccacca

The query sequence (length=69) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5e81:1L 69 69 1.0000 1.0000 1.0000 3.04e-31
2 5ib7:1L 66 66 0.9565 1.0000 1.0000 1.41e-29 5ib8:1L
3 5e7k:1K 71 71 1.0000 0.9718 0.9718 1.83e-28
4 5el4:1K 69 70 0.9855 0.9855 0.9714 6.57e-28 5el5:1K, 5el6:1K, 5el7:1K
5 5e81:1K 72 72 1.0000 0.9583 0.9583 8.50e-27 5ib7:1K, 5ib8:1K
6 5e81:3K 70 70 0.9710 0.9571 0.9571 3.06e-26 5ib7:3K, 5ib8:3K
7 5e7k:1L 73 73 1.0000 0.9452 0.9452 1.10e-25 5el6:1L
8 5e81:3L 72 72 0.9855 0.9444 0.9444 3.96e-25
9 7zta:PTR1 73 73 0.9855 0.9315 0.9315 5.12e-24
10 5el4:1L 74 74 1.0000 0.9324 0.9324 5.12e-24 5el5:1L
11 5el4:3L 74 74 0.9855 0.9189 0.9189 2.38e-22
12 8bhj:5 76 76 1.0000 0.9079 0.9079 3.08e-21 8bhn:5, 5e7k:3K, 5e7k:3L, 5el4:3K, 5el5:3K, 5el6:3K, 5el7:3K, 5gak:A, 6hd7:A, 5mc6:m, 7n1p:Pt, 7n2c:Pt, 7n2v:Pt, 7n31:Pt, 7nrc:Sm, 6tnu:m, 5uyn:Y, 5uyp:Y, 5uyq:Y
13 8fom:QV 74 74 0.9710 0.9054 0.9054 1.11e-20 8fom:XV, 8fon:QV, 8fon:XV
14 7rr5:A 76 76 0.9855 0.8947 0.8947 1.43e-19
15 5el7:3L 75 76 0.9855 0.9067 0.8947 1.43e-19

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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