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BioLiP
>rna
gggucguuagcucagugagagcaguugacuuuuaaucaauugucgcagguucgaauccugcacgacccacca

The query sequence (length=72) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5e81:1K 72 72 1.0000 1.0000 1.0000 6.92e-33 5ib7:1K, 5ib8:1K
2 5e7k:1K 71 72 0.9861 1.0000 0.9861 1.16e-30
3 5e81:3L 72 73 0.9861 0.9861 0.9726 1.50e-29
4 5el4:3L 74 74 0.9861 0.9595 0.9595 1.94e-28
5 5el4:1L 74 74 0.9861 0.9595 0.9595 1.94e-28 5el5:1L
6 7zta:PTR1 73 73 0.9722 0.9589 0.9589 6.97e-28
7 5e81:3K 70 72 0.9583 0.9857 0.9583 2.51e-27 5ib7:3K, 5ib8:3K
8 8bhj:5 76 76 1.0000 0.9474 0.9474 2.51e-27 8bhn:5, 5e7k:3K, 5e7k:3L, 5el4:3K, 5el5:3K, 5el6:3K, 5el7:3K, 5gak:A, 6hd7:A, 5mc6:m, 7n1p:Pt, 7n2c:Pt, 7n2v:Pt, 7n31:Pt, 7nrc:Sm, 6tnu:m, 5uyn:Y, 5uyp:Y, 5uyq:Y
9 8fom:QV 74 74 0.9722 0.9459 0.9459 9.01e-27 8fom:XV, 8fon:QV, 8fon:XV
10 5el4:1K 69 72 0.9583 1.0000 0.9583 9.01e-27 5el5:1K, 5el6:1K, 5el7:1K
11 5e81:1L 69 72 0.9583 1.0000 0.9583 9.01e-27
12 5e7k:1L 73 74 0.9722 0.9589 0.9459 3.24e-26 5el6:1L
13 7rr5:A 76 76 0.9861 0.9342 0.9342 1.17e-25
14 5el7:3L 75 76 0.9861 0.9467 0.9342 4.19e-25

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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