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BioLiP
>rna
ggguacgaccauacuuggccgaaugcaccauaucccguccgauuugugaaguuaagcggccacaggccucguuaguacgg
cgaucagugauggcgcuggaacccgggguguuguacucu

The query sequence (length=119) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ova:BD 119 119 1.0000 1.0000 1.0000 9.74e-59 8ove:BD, 4v8m:BD
2 5t5h:D 114 110 0.8739 0.9123 0.9455 1.29e-42
3 6az3:8 118 117 0.8151 0.8220 0.8291 1.02e-23
4 8rxh:L8 120 117 0.8067 0.8000 0.8205 4.76e-22
5 8a3w:8 119 117 0.8067 0.8067 0.8205 4.76e-22 8ovj:8, 8rxx:L8, 5t2a:D
6 3jcs:8 119 117 0.8067 0.8067 0.8205 1.71e-21
7 8a98:8 118 118 0.8067 0.8136 0.8136 2.22e-20

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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