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BioLiP
>rna
ggggggccacuagggacaggauguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaa
guga

The query sequence (length=84) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ox9:A 84 84 1.0000 1.0000 1.0000 1.81e-39 7qqo:A, 7qr7:A
2 7qqq:A 83 83 0.9881 1.0000 1.0000 6.51e-39
3 7qqp:A 84 83 0.9881 0.9881 1.0000 6.51e-39 7qqr:A
4 7oxa:A 81 81 0.9643 1.0000 1.0000 8.43e-38
5 8g1i:B 98 64 0.7619 0.6531 1.0000 2.38e-28
6 7zo1:A 85 62 0.7381 0.7294 1.0000 3.07e-27
7 7z4d:F 77 62 0.7381 0.8052 1.0000 3.07e-27
8 7z4d:A 75 62 0.7381 0.8267 1.0000 3.07e-27
9 7s36:R 87 62 0.7381 0.7126 1.0000 3.07e-27 8t6o:B
10 7qr8:A 85 62 0.7381 0.7294 1.0000 3.07e-27
11 7qr1:A 83 62 0.7381 0.7470 1.0000 3.07e-27
12 7qr0:A 82 62 0.7381 0.7561 1.0000 3.07e-27
13 7qqw:A 81 62 0.7381 0.7654 1.0000 3.07e-27
14 7qqv:A 85 62 0.7381 0.7294 1.0000 3.07e-27
15 7qqs:A 84 62 0.7381 0.7381 1.0000 3.07e-27 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
16 7ox8:A 84 62 0.7381 0.7381 1.0000 3.07e-27
17 5fq5:A 83 62 0.7381 0.7470 1.0000 3.07e-27
18 4zt0:B 72 61 0.7262 0.8472 1.0000 1.11e-26 4zt0:D, 4zt9:B, 4zt9:D
19 7z4g:A 91 61 0.7262 0.6703 1.0000 1.11e-26
20 8ygj:B 136 61 0.7262 0.4485 1.0000 1.11e-26
21 8ye6:C 92 61 0.7262 0.6630 1.0000 1.11e-26 7z4h:A
22 5y36:B 99 61 0.7262 0.6162 1.0000 1.11e-26
23 8wuv:B 126 61 0.7262 0.4841 1.0000 1.11e-26
24 8wuu:B 111 61 0.7262 0.5495 1.0000 1.11e-26
25 8wut:B 112 61 0.7262 0.5446 1.0000 1.11e-26
26 8wus:B 115 61 0.7262 0.5304 1.0000 1.11e-26
27 5vw1:C 73 61 0.7262 0.8356 1.0000 1.11e-26
28 6vpc:A 81 61 0.7262 0.7531 1.0000 1.11e-26
29 4un4:A 82 61 0.7262 0.7439 1.0000 1.11e-26 4un5:A
30 8t78:B 89 61 0.7262 0.6854 1.0000 1.11e-26
31 8t77:B 89 61 0.7262 0.6854 1.0000 1.11e-26 8t79:B
32 8t6y:B 88 61 0.7262 0.6932 1.0000 1.11e-26
33 8t6t:B 95 61 0.7262 0.6421 1.0000 1.11e-26
34 8t6s:B 90 61 0.7262 0.6778 1.0000 1.11e-26 7z4c:A
35 8t6p:B 88 61 0.7262 0.6932 1.0000 1.11e-26 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
36 7s4v:B 98 61 0.7262 0.6224 1.0000 1.11e-26 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
37 7s4u:B 97 61 0.7262 0.6289 1.0000 1.11e-26
38 7s38:R 87 61 0.7262 0.7011 1.0000 1.11e-26
39 7ox7:A 81 61 0.7262 0.7531 1.0000 1.11e-26
40 4oo8:B 97 61 0.7262 0.6289 1.0000 1.11e-26 4oo8:E
41 6o0z:B 96 61 0.7262 0.6354 1.0000 1.11e-26 8t6x:B, 7z4i:A, 7z4l:A
42 6o0x:B 98 61 0.7262 0.6224 1.0000 1.11e-26 6o0y:B
43 8kal:E 95 61 0.7262 0.6421 1.0000 1.11e-26
44 8kak:A 94 61 0.7262 0.6489 1.0000 1.11e-26 8kak:E, 8kal:A, 8kam:A
45 8kag:A 98 61 0.7262 0.6224 1.0000 1.11e-26
46 6k4s:A 80 61 0.7262 0.7625 1.0000 1.11e-26 6k4u:A
47 6k4p:A 82 61 0.7262 0.7439 1.0000 1.11e-26
48 6ifo:D 90 61 0.7262 0.6778 1.0000 1.11e-26
49 6ifo:C 88 61 0.7262 0.6932 1.0000 1.11e-26 5xbl:B
50 5fw1:A 81 61 0.7262 0.7531 1.0000 1.11e-26 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
51 6ai6:B 81 61 0.7262 0.7531 1.0000 1.11e-26 5b2r:A, 5b2s:A, 5b2t:A
52 6aeb:A 95 61 0.7262 0.6421 1.0000 1.11e-26 6aeb:E, 6aeg:A
53 8ye9:C 90 61 0.7024 0.6556 0.9672 8.61e-23
54 7v59:C 115 46 0.5476 0.4000 1.0000 2.41e-18 7v59:G
55 8fzt:B 69 46 0.5476 0.6667 1.0000 2.41e-18
56 5f9r:A 116 46 0.5476 0.3966 1.0000 2.41e-18 6mcb:B, 6mcc:B, 5vzl:B
57 8kah:I 63 45 0.5357 0.7143 1.0000 8.67e-18 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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