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BioLiP
>rna
ggggcuauagcucagaagggagagcgcuugcauggcaagcaagaggucagcgguucgaucccgcuuagcuccacca

The query sequence (length=76) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6oj2:QW 76 76 1.0000 1.0000 1.0000 4.45e-35 6oj2:XW
2 6of6:QW 76 76 0.9737 0.9737 0.9737 9.63e-32 6of6:XW
3 6ord:XY 76 76 0.9605 0.9605 0.9605 4.48e-30
4 6oj2:XY 76 76 0.9605 0.9605 0.9605 4.48e-30 8pkl:Y, 8r3v:Y2, 8rcl:Y2, 8rcm:Y2, 8rcs:Y, 8rct:Y
5 6ope:QY 75 75 0.9474 0.9600 0.9600 1.61e-29 6ope:XY
6 6of6:QY 75 75 0.9474 0.9600 0.9600 1.61e-29 6of6:XY, 6oj2:QY
7 3vjr:B 36 28 0.3684 0.7778 1.0000 2.14e-08 3vjr:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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