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BioLiP
>rna
gggcuuguagcucaggugguuagagcgcaccgcgaaagcggugaggucggugguucaaguccacucaggccuacca

The query sequence (length=76) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8vu0:C 76 76 1.0000 1.0000 1.0000 4.45e-35 8vu0:D
2 5o2r:x 77 77 0.9605 0.9481 0.9481 7.49e-28
3 7b5k:x 77 77 0.9474 0.9351 0.9351 3.49e-26
4 8zyc:C 73 73 0.9079 0.9452 0.9452 1.25e-25 8zyd:C
5 1ffy:T 75 73 0.9079 0.9200 0.9452 1.25e-25 1qu2:T, 1qu3:T
6 5kcs:1x 73 77 0.9079 0.9452 0.8961 4.54e-20

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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