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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>rna
gggcuauagcucagcugggagagcgcuugcuuggcaagcaagaggucagcgguucgaucccgcuuagcuccacca

The query sequence (length=75) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ord:XY 76 75 1.0000 0.9868 1.0000 1.57e-34
2 6ope:QY 75 75 1.0000 1.0000 1.0000 1.57e-34 6ope:XY
3 6oj2:XY 76 75 0.9733 0.9605 0.9733 3.40e-31 8pkl:Y, 8r3v:Y2, 8rcl:Y2, 8rcm:Y2, 8rcs:Y, 8rct:Y
4 6of6:QY 75 74 0.9600 0.9600 0.9730 1.22e-30 6of6:XY, 6oj2:QY
5 6oj2:QW 76 75 0.9600 0.9474 0.9600 1.58e-29 6oj2:XW
6 6of6:QW 76 75 0.9333 0.9211 0.9333 3.43e-26 6of6:XW
7 3vjr:B 36 28 0.3733 0.7778 1.0000 2.11e-08 3vjr:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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