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BioLiP
>rna
gggcguguggcguagucgagcgcgcucccuuagcaugggagaggucuccgguucgauuccggacucguccgccaa

The query sequence (length=75) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8agt:x 75 75 1.0000 1.0000 1.0000 1.57e-34
2 8aaf:x 74 74 0.9867 1.0000 1.0000 5.65e-34 8agv:x, 8agw:x, 8agx:x, 8agz:x
3 8aaf:y 73 74 0.9733 1.0000 0.9865 9.46e-32 8agt:y, 8agu:y, 8agv:y, 8agw:y, 8agx:y, 8agz:y
4 6r84:B 76 76 0.9867 0.9737 0.9737 3.40e-31 6r87:B, 7zw0:sn
5 9bdp:TIRN 70 76 0.8933 0.9571 0.8816 7.47e-18

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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