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BioLiP
>rna
ggccgggcgcgguggcgcgcgccuguagucccagcuacucgggaggcuc

The query sequence (length=49) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ry1:E 49 49 1.0000 1.0000 1.0000 2.48e-20
2 1e8o:E 50 49 1.0000 0.9800 1.0000 2.48e-20
3 4ue5:A 299 47 0.9592 0.1572 1.0000 3.20e-19
4 6r6g:AF 206 47 0.9592 0.2282 1.0000 3.20e-19
5 7nfx:1 249 47 0.9592 0.1888 1.0000 3.20e-19 7obr:1
6 3jaj:4 206 47 0.9592 0.2282 1.0000 3.20e-19 3jan:4
7 6frk:1 258 47 0.9592 0.1822 1.0000 3.20e-19

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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