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BioLiP
>rna
ggcccggggcgguucgauuccgcccugggccauc

The query sequence (length=34) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2zhb:B 34 34 1.0000 1.0000 1.0000 2.96e-12
2 2zh9:B 33 33 0.9706 1.0000 1.0000 1.07e-11 2zha:B
3 2zh8:B 34 32 0.9412 0.9412 1.0000 3.83e-11
4 2zh7:B 33 32 0.9412 0.9697 1.0000 3.83e-11
5 2zh5:B 34 32 0.9412 0.9412 1.0000 3.83e-11 2zh6:B
6 2zh4:B 34 32 0.9412 0.9412 1.0000 3.83e-11
7 2zh3:B 34 32 0.9412 0.9412 1.0000 3.83e-11
8 2zh2:B 34 32 0.9412 0.9412 1.0000 3.83e-11
9 2zh1:B 33 32 0.9412 0.9697 1.0000 3.83e-11
10 2drb:B 35 32 0.9412 0.9143 1.0000 3.83e-11
11 2dr9:B 34 32 0.9412 0.9412 1.0000 3.83e-11 2dra:B, 2dvi:B
12 2dr7:B 33 32 0.9412 0.9697 1.0000 3.83e-11 2dr8:B
13 2dr5:B 32 32 0.9412 1.0000 1.0000 3.83e-11

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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