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BioLiP
>rna
ggccccuuagcucagugguuagagcaggcgacucauaaucgcuuggucgcugguucaaauccagcaggggccacca

The query sequence (length=76) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8hsp:X 76 76 1.0000 1.0000 1.0000 4.45e-35 8hu1:X
2 8g7p:w 76 76 0.9868 0.9868 0.9868 2.07e-33 8g7p:y, 8g7q:w, 8g7q:y, 8g7r:w, 8g7r:y, 8g7s:x, 8g7s:y
3 8akn:Z 76 76 0.9737 0.9737 0.9737 9.63e-32
4 8r6c:Y 73 76 0.9474 0.9863 0.9474 2.70e-27

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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