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BioLiP
>rna
ggcaucgugccucgcauugcacuccgcggggcgauaaguccugaaaagggauguc

The query sequence (length=55) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6lax:A 55 55 1.0000 1.0000 1.0000 1.36e-23 6lax:B
2 6las:A 55 55 0.9818 0.9818 0.9818 6.35e-22 6las:B, 6lau:B, 6laz:A, 6laz:B
3 6lau:A 54 54 0.9636 0.9815 0.9815 2.28e-21

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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