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BioLiP
>rna
ggaggucaacaucaagaacugugggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauccauauuuuuuggaacuuuuc

The query sequence (length=117) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gm6:D 117 117 1.0000 1.0000 1.0000 1.24e-57 5gmk:D, 5wsg:D, 5y88:B, 5ylz:B
2 3jcm:F 113 117 0.9658 1.0000 0.9658 7.49e-50
3 7dco:B 179 96 0.8205 0.5363 1.0000 5.83e-46 6j6g:D, 6j6h:D, 6j6n:D, 6j6q:D
4 6bk8:5 103 96 0.8205 0.9320 1.0000 5.83e-46
5 6exn:5 171 100 0.8205 0.5614 0.9600 2.11e-40
6 7b9v:5 178 100 0.8205 0.5393 0.9600 2.11e-40
7 5zwm:B 175 96 0.7863 0.5257 0.9583 3.53e-38 5zwo:B
8 5nrl:5 170 96 0.7863 0.5412 0.9583 3.53e-38
9 5gam:U 141 96 0.7863 0.6525 0.9583 3.53e-38 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5, 5mq0:5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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