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BioLiP
>rna
gcugggauguuggcuuagaagcagccaucauuuaaagagugcguaacagcucaccagc

The query sequence (length=58) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jq7:B 58 58 1.0000 1.0000 1.0000 3.17e-25 1mms:C, 1mms:D, 1oln:C
2 4v4b:B3 2863 55 0.9310 0.0189 0.9818 6.86e-22
3 6yef:A 2881 53 0.8793 0.0177 0.9623 4.13e-19
4 8y38:A 2885 53 0.8793 0.0177 0.9623 4.13e-19 8y39:A
5 8y37:A 2884 53 0.8793 0.0177 0.9623 4.13e-19
6 8y36:A 2885 53 0.8793 0.0177 0.9623 4.13e-19
7 4wzo:1H 2902 50 0.8448 0.0169 0.9800 4.13e-19
8 4wq1:14 2907 50 0.8448 0.0169 0.9800 4.13e-19 4wr6:14
9 4v9b:DA 2906 50 0.8448 0.0169 0.9800 4.13e-19
10 4v87:DA 2907 50 0.8448 0.0169 0.9800 4.13e-19 4v8b:DA, 4v8d:DA, 4v8e:CA, 4v8f:DA
11 4v6g:DA 2886 50 0.8448 0.0170 0.9800 4.13e-19
12 4v6g:BA 2885 50 0.8448 0.0170 0.9800 4.13e-19
13 6qnq:14 2879 50 0.8448 0.0170 0.9800 4.13e-19
14 6qnq:1H 2879 50 0.8448 0.0170 0.9800 4.13e-19
15 8p2f:A 2844 53 0.8793 0.0179 0.9623 4.13e-19 8p2g:A, 8p2h:A
16 7nhm:A 2824 53 0.8793 0.0181 0.9623 4.13e-19
17 7nhl:A 2914 53 0.8793 0.0175 0.9623 4.13e-19
18 5ndj:14 2909 50 0.8448 0.0168 0.9800 4.13e-19 5ndk:14, 4v6f:AA, 4v8c:BA, 4v9a:DA, 4wqr:14, 4wra:14, 4wsd:14, 4wsm:14, 4wt1:14, 4wu1:14, 4wzd:14
19 5nd8:A 2912 53 0.8793 0.0175 0.9623 4.13e-19
20 5li0:A 2914 53 0.8793 0.0175 0.9623 4.13e-19 5nd9:A
21 6gzq:A1 2912 50 0.8448 0.0168 0.9800 4.13e-19 6gzx:A1, 6gzx:A2, 6gzz:A1, 6gzz:A2, 5ndj:1H, 5ndk:1H, 4v6f:DA, 4v87:AA, 4v8b:BA, 4v8c:AA, 4v8d:BA, 4v8e:AA, 4v8f:AA, 4v9a:BA, 4v9b:BA, 4wq1:1H, 4wqr:1H, 4wr6:1H, 4wra:1H, 4wro:1H, 4wsd:1H, 4wsm:1H, 4wt1:1H, 4wu1:1H, 4wzd:1H
22 6gsl:14 2895 50 0.8448 0.0169 0.9800 4.13e-19
23 6gsl:1H 2895 50 0.8448 0.0169 0.9800 4.13e-19
24 6gsj:1H 2850 50 0.8448 0.0172 0.9800 4.13e-19
25 6fxc:AA 2905 53 0.8793 0.0176 0.9623 4.13e-19 6fxc:BA, 5ngm:AA, 6s0x:A, 6s0z:A, 6s12:A, 6s13:A
26 5e81:1H 2885 50 0.8448 0.0170 0.9800 4.13e-19
27 6ztm:BA 2901 50 0.8103 0.0162 0.9400 8.94e-16
28 6ztl:BA 2899 50 0.8103 0.0162 0.9400 8.94e-16 6ztn:BA
29 6ztj:BA 2900 50 0.8103 0.0162 0.9400 8.94e-16 6zto:BA, 6ztp:BA, 6zu1:BA
30 7zq5:b 2900 50 0.8103 0.0162 0.9400 8.94e-16
31 7zod:b 2901 50 0.8103 0.0162 0.9400 8.94e-16 7zp8:b, 7zq6:b
32 7z20:b 2901 50 0.8103 0.0162 0.9400 8.94e-16
33 6y69:A 2887 50 0.8103 0.0163 0.9400 8.94e-16
34 6wnw:4 3031 50 0.8103 0.0155 0.9400 8.94e-16
35 6wnt:4 3025 50 0.8103 0.0155 0.9400 8.94e-16 6wnv:4
36 5wdt:A 2900 50 0.8103 0.0162 0.9400 8.94e-16 5we4:A, 5we6:A, 5wf0:A, 5wfk:A, 5wfs:A
37 4v9d:DA 2896 50 0.8103 0.0162 0.9400 8.94e-16
38 4v85:BA 2853 50 0.8103 0.0165 0.9400 8.94e-16 4v89:BA
39 4v4v:B0 2740 50 0.8103 0.0172 0.9400 8.94e-16 4v4w:B0
40 8upo:a 2880 50 0.8103 0.0163 0.9400 8.94e-16 8upr:a, 8uql:a, 8uqm:a, 8uqp:a, 8ur0:a, 8urh:a, 8uri:a, 8urx:a, 8ury:a, 6vu3:a, 6vyq:a, 6vyr:a, 6vys:a, 6vyt:a, 6vyu:a, 6vyw:a, 6vyx:a, 6vyy:a, 6vyz:a, 6vz2:a, 6vz3:a, 6vz5:a, 6vz7:a, 6vzj:a, 6x6t:a, 6x7f:a, 6x7k:a, 6x9q:a, 6xdq:a, 6xdr:a, 6xgf:a, 6xii:a, 6xij:a
41 7uph:I 4438 50 0.8103 0.0106 0.9400 8.94e-16
42 5u9f:01 2903 50 0.8103 0.0162 0.9400 8.94e-16 5u9g:01
43 6qul:A 2795 50 0.8103 0.0168 0.9400 8.94e-16
44 6qdw:b 2888 50 0.8103 0.0163 0.9400 8.94e-16 6ys3:b
45 8pkl:7 2904 50 0.8103 0.0162 0.9400 8.94e-16 8r3v:72, 8rcl:72, 8rcm:72, 8rcs:72, 8rct:72
46 7pjt:A 2902 50 0.8103 0.0162 0.9400 8.94e-16
47 8phj:a 2862 50 0.8103 0.0164 0.9400 8.94e-16
48 7otc:A 2903 50 0.8103 0.0162 0.9400 8.94e-16
49 7oj0:a 2807 50 0.8103 0.0167 0.9400 8.94e-16
50 5np6:Y 2903 50 0.8103 0.0162 0.9400 8.94e-16 7pjs:A, 7pju:A, 7pjv:A, 7pjw:A, 7pjx:A, 7pjy:A, 7pjz:A
51 7nbu:a 2900 50 0.8103 0.0162 0.9400 8.94e-16
52 7n2v:23 2904 50 0.8103 0.0162 0.9400 8.94e-16 7n31:23, 4v6k:AB, 4v6l:BB, 4v6m:B8, 4v6n:AB, 4v6o:BB, 4v6p:BB, 4v6q:BB, 4v6r:BB, 4v6s:AB, 4v6v:BA
53 7n2u:23 2902 50 0.8103 0.0162 0.9400 8.94e-16
54 7n1p:23 2904 50 0.8103 0.0162 0.9400 8.94e-16
55 5lza:A 2900 50 0.8103 0.0162 0.9400 8.94e-16 5lze:A, 5lzf:A
56 6lkq:t 2850 50 0.8103 0.0165 0.9400 8.94e-16
57 5l3p:A 2890 50 0.8103 0.0163 0.9400 8.94e-16
58 5kcs:1A 2900 50 0.8103 0.0162 0.9400 8.94e-16
59 5kcr:1A 2897 50 0.8103 0.0162 0.9400 8.94e-16
60 3ja1:LA 2904 50 0.8103 0.0162 0.9400 8.94e-16
61 3j9z:LA 2904 50 0.8103 0.0162 0.9400 8.94e-16
62 3j8g:B 2874 50 0.8103 0.0164 0.9400 8.94e-16
63 3j5l:A 2853 50 0.8103 0.0165 0.9400 8.94e-16
64 3j0d:A 50 50 0.8103 0.9400 0.9400 8.94e-16
65 6hrm:1 4450 50 0.8103 0.0106 0.9400 8.94e-16
66 6h4n:A 2900 50 0.8103 0.0162 0.9400 8.94e-16 6h58:A, 6h58:AA, 5mgp:A
67 6gxn:A 2895 50 0.8103 0.0162 0.9400 8.94e-16
68 6gwt:A 2896 50 0.8103 0.0162 0.9400 8.94e-16 6gxm:A, 6gxp:A
69 6gc0:A 2729 50 0.8103 0.0172 0.9400 8.94e-16
70 6gbz:A 2789 50 0.8103 0.0169 0.9400 8.94e-16
71 5gae:A 2884 50 0.8103 0.0163 0.9400 8.94e-16
72 5gad:A 2883 50 0.8103 0.0163 0.9400 8.94e-16 5gaf:A, 5gag:A, 5gah:A, 5nco:A, 6s0k:A
73 8fzd:A 2899 50 0.8103 0.0162 0.9400 8.94e-16 8fze:A, 8fzf:A, 8fzg:A, 8fzh:A, 8fzi:A, 8fzj:A, 8g7p:A, 8g7q:A, 8g7r:A, 8g7s:A, 8p16:1, 8p17:1, 8p18:1, 8qk7:1
74 6enj:A 2871 50 0.8103 0.0164 0.9400 8.94e-16 6enu:A
75 6enf:A 2807 50 0.8103 0.0167 0.9400 8.94e-16
76 8e33:I 2897 50 0.8103 0.0162 0.9400 8.94e-16 8e36:I, 8e3l:I, 8e3o:I, 8e43:I, 8e45:I, 8e46:I, 6pc5:I, 6pc6:I, 6pc7:I, 6pc8:I, 6pch:I, 6pcq:I, 6pcr:I, 6pcs:I, 6pct:I, 6wyv:I
77 6dnc:B 2903 50 0.8103 0.0162 0.9400 8.94e-16 5kps:28, 5kpv:27, 5kpw:27, 5kpx:27, 6ysr:A, 6yss:A, 6yst:A, 6ysu:A
78 3deg:G 70 50 0.8103 0.6714 0.9400 8.94e-16
79 6by1:DA 2869 50 0.8103 0.0164 0.9400 8.94e-16
80 6by1:CA 2867 50 0.8103 0.0164 0.9400 8.94e-16
81 7bv8:A 2897 50 0.8103 0.0162 0.9400 8.94e-16 5h5u:A
82 6bu8:01 2903 50 0.8103 0.0162 0.9400 8.94e-16 7jss:1, 7jsw:1, 7jsz:1, 7jt1:1, 7jt2:1, 7jt3:1, 7k50:1, 7k51:1, 7k52:1, 7k53:1, 7k54:1, 7k55:1, 7lv0:1, 6ofx:1, 6og7:1, 6ogf:1, 6ogg:1, 6ogi:1, 7ss9:1, 7ssd:1, 7ssl:1, 7ssn:1, 7sso:1, 7ssw:1, 7st2:1, 7st6:1, 7st7:1, 7tos:23S, 5uyk:01, 5uyl:01, 5uym:01, 5uyn:01, 5uyp:01, 5uyq:01, 8vs9:23S, 8vsa:23S, 6wd0:1, 6wd1:1, 6wd2:1, 6wd3:1, 6wd4:1, 6wd5:1, 6wd6:1, 6wd7:1, 6wd8:1, 6wd9:1, 6wda:1, 6wdb:1, 6wdc:1, 6wdd:1, 6wde:1, 6wdf:1, 6wdg:1, 6wdh:1, 6wdi:1, 6wdj:1, 6wdk:1, 6wdl:1, 6wdm:1
83 7bl5:A 2913 50 0.8103 0.0161 0.9400 8.94e-16
84 7bl2:A 2902 50 0.8103 0.0162 0.9400 8.94e-16 7bl3:A
85 3bbx:B 2902 50 0.8103 0.0162 0.9400 8.94e-16
86 8b7y:I 2898 50 0.8103 0.0162 0.9400 8.94e-16 8e30:I, 8e32:I, 8e35:I, 8e3m:I, 8e41:I, 8e42:I, 8e44:I, 8e47:I, 8e48:I, 8e49:I, 6i7v:CA, 5it8:CA, 5j5b:CA, 5j7l:CA, 5j88:CA, 5j8a:CA, 5j91:CA, 5jc9:CA, 7lvk:I, 6pj6:I, 7qq3:I, 7s1g:I, 7s1h:I, 7s1i:I, 7s1j:I, 7s1k:I, 6u48:CA, 4ybb:CA
87 7b5k:A 2897 50 0.8103 0.0162 0.9400 8.94e-16 7bl4:A, 7bl6:A, 8fiz:BA, 6gc8:A, 6i7v:DA, 5it8:DA, 5j5b:DA, 5j7l:DA, 5j88:DA, 5j8a:DA, 5j91:DA, 3jcn:A, 5jc9:DA, 5jte:BA, 5ju8:BA, 5nwy:N, 7o19:BA, 7o1a:BA, 7o1c:BA, 7q4k:BA, 7qg8:N, 7qgh:N, 7qgn:N, 7qgr:N, 6tbv:23S1, 6tc3:23S1, 4u1u:BA, 4u1u:DA, 4u1v:BA, 4u1v:DA, 4u20:BA, 4u20:DA, 4u24:BA, 4u24:DA, 4u25:BA, 4u25:DA, 4u26:BA, 4u26:DA, 4u27:BA, 4u27:DA, 4v9c:BA, 4v9c:DA, 4v9d:CA, 4wf1:BA, 4wf1:DA, 4woi:BA, 4woi:CA, 6xz7:A, 6xza:A2, 6xzb:A2, 4ybb:DA
88 9ax8:A 2854 50 0.8103 0.0165 0.9400 8.94e-16 6i0y:A, 3j7z:A, 3jcj:A, 6o9k:A, 4uy8:A, 4v6c:BA, 4v6d:BA, 4v6e:BA, 4v7b:BA, 4v7s:BA, 4v7t:BA, 4v7u:BA, 4v7v:BA, 4v9o:AA, 4v9o:CA, 4v9o:EA, 4v9o:GA, 4v9p:AA, 4v9p:CA, 4v9p:EA, 4v9p:GA, 4www:RA
89 5aka:B 2841 50 0.8103 0.0165 0.9400 8.94e-16 2j28:B, 6o9j:B, 4v4h:BB, 4v4h:DB, 4v4q:BB, 4v4q:DB, 4v50:BB, 4v50:DB, 4v52:BB, 4v52:DB, 4v53:BB, 4v53:DB, 4v54:BB, 4v54:DB, 4v55:BB, 4v55:DB, 4v56:BB, 4v56:DB, 4v57:BB, 4v57:DB, 4v5b:AB, 4v5b:CB, 4v5y:BB, 4v5y:DB, 4v64:BB, 4v64:DB, 4v6c:DA, 4v6d:DA, 4v6e:DA, 4v7s:DA, 4v7t:DA, 4v7u:DA, 4v7v:DA, 4www:YA
90 5afi:A 2900 50 0.8103 0.0162 0.9400 8.94e-16 7cpj:A, 6gxo:A, 3j9y:A, 5o2r:A, 8rpy:A, 8rpz:A, 8rq0:A, 8rq2:A
91 5ady:B 2903 50 0.8103 0.0162 0.9400 8.94e-16 4csu:B, 7d6z:A, 7d80:A, 8g2u:B, 8g31:B, 8g34:B, 8g38:B, 3jbu:b, 3jbv:b, 3jcd:A, 3jce:A, 5lzb:A, 5lzc:A, 5lzd:A, 7n2c:23, 7nso:A, 7nsp:A, 7nsq:A, 8peg:7, 6szs:A, 8t5d:B, 8t5h:B, 7ug7:23, 4v5h:BB, 4v65:BB, 4v66:BB, 4v69:BB, 4v6t:BA, 4v6y:BA, 4v6z:BA, 4v70:BA, 4v71:BA, 4v72:BA, 4v73:BA, 4v74:BA, 4v75:BA, 4v76:BA, 4v77:BA, 4v78:BA, 4v79:BA, 4v7a:BA, 4v7i:A8, 7zta:23S1
92 7ac7:1 2903 50 0.8103 0.0162 0.9400 8.94e-16 7acj:1, 7acr:1, 7m5d:1, 5mdv:1, 5mdw:1, 5mdy:1, 5mdz:1, 7nwt:1, 7nww:1, 7oif:1, 7oig:1, 7oii:1, 6om6:1, 6ore:1, 6orl:1, 6osk:1, 6osq:1, 6ost:1, 6ot3:1, 7ot5:1, 6ouo:1, 6q97:1, 6q98:1, 6q9a:1, 7sa4:1
93 7abz:1 2904 50 0.8103 0.0162 0.9400 8.94e-16 6c4i:A, 5iqr:1, 5u4i:A, 8w51:A
94 8a3l:a 2903 50 0.8103 0.0162 0.9400 8.94e-16
95 4v7c:BA 2897 49 0.7931 0.0159 0.9388 3.22e-15 4v7d:AA
96 7n30:23 2901 50 0.7931 0.0159 0.9200 1.50e-13

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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