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BioLiP
>rna
gcugauauagcucaguagagcgcacccuugguaagggugaggucggcaguucgaaucugccuaucagcacca

The query sequence (length=72) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gsj:3K 72 72 1.0000 1.0000 1.0000 6.92e-33 6gsk:3K
2 6gsj:1K 74 74 0.9861 0.9595 0.9595 1.94e-28 6gsj:1L, 6gsk:1L
3 4v5g:AY 77 76 0.9861 0.9221 0.9342 1.17e-25 4v5g:CY
4 5l3p:y 73 73 0.9444 0.9315 0.9315 5.43e-24

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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