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BioLiP
>rna
gcucuuggucgcgccugcguaggauaggugggagccuggcgccggugaaauccacccuggcgcggcugggggc

The query sequence (length=73) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v51:BA 2772 73 1.0000 0.0263 1.0000 1.96e-33 4v51:DA
2 6q95:1 2831 73 1.0000 0.0258 1.0000 1.96e-33
3 2om7:J 73 73 1.0000 1.0000 1.0000 1.96e-33
4 7lh5:BA 2824 73 1.0000 0.0258 1.0000 1.96e-33 7lh5:DA
5 4v6a:BA 2767 74 0.9726 0.0257 0.9595 1.97e-28
6 4v6a:DA 2777 74 0.9315 0.0245 0.9189 2.57e-22
7 4v5a:BA 2767 74 0.9178 0.0242 0.9054 4.30e-20 4v5a:DA
8 5zlu:V 2875 38 0.5205 0.0132 1.0000 5.61e-14
9 4zer:2A 2869 38 0.5205 0.0132 1.0000 5.61e-14
10 4zer:1A 2824 38 0.5205 0.0135 1.0000 5.61e-14
11 4xej:A23S 2876 38 0.5205 0.0132 1.0000 5.61e-14
12 4wzo:14 2877 38 0.5205 0.0132 1.0000 5.61e-14
13 4wzo:1H 2902 38 0.5205 0.0131 1.0000 5.61e-14
14 4wqf:CA 2848 38 0.5205 0.0133 1.0000 5.61e-14 4wqy:CA
15 4wqf:AA 2852 38 0.5205 0.0133 1.0000 5.61e-14 4wqy:AA
16 4wq1:14 2907 38 0.5205 0.0131 1.0000 5.61e-14 4wr6:14
17 4w2h:BA 2822 38 0.5205 0.0135 1.0000 5.61e-14 4w2i:BA
18 4w2e:A 2873 38 0.5205 0.0132 1.0000 5.61e-14
19 1vy4:BA 2819 38 0.5205 0.0135 1.0000 5.61e-14 1vy5:BA, 1vy6:BA, 1vy7:BA, 4w2g:BA
20 4v9q:AA 2832 38 0.5205 0.0134 1.0000 5.61e-14 4v9q:CA
21 4v9h:BA 2859 38 0.5205 0.0133 1.0000 5.61e-14
22 4v9b:DA 2906 38 0.5205 0.0131 1.0000 5.61e-14
23 4v97:DA 2824 38 0.5205 0.0135 1.0000 5.61e-14
24 4v97:BA 2810 38 0.5205 0.0135 1.0000 5.61e-14
25 5v8i:2A 2858 38 0.5205 0.0133 1.0000 5.61e-14
26 5v8i:1A 2862 38 0.5205 0.0133 1.0000 5.61e-14
27 4v8q:AA 2901 38 0.5205 0.0131 1.0000 5.61e-14
28 4v8j:BA 2803 38 0.5205 0.0136 1.0000 5.61e-14 4v8j:DA
29 4v8i:DA 2798 38 0.5205 0.0136 1.0000 5.61e-14
30 4v8i:BA 2827 38 0.5205 0.0134 1.0000 5.61e-14
31 4v8h:DA 2814 38 0.5205 0.0135 1.0000 5.61e-14
32 4v8h:BA 2837 38 0.5205 0.0134 1.0000 5.61e-14
33 4v8g:DA 2814 38 0.5205 0.0135 1.0000 5.61e-14
34 4v8g:BA 2809 38 0.5205 0.0135 1.0000 5.61e-14
35 4v8a:AA 2827 38 0.5205 0.0134 1.0000 5.61e-14 4v8a:BA
36 4v87:DA 2907 38 0.5205 0.0131 1.0000 5.61e-14 4v8b:DA, 4v8d:DA, 4v8e:CA, 4v8f:DA
37 4v7m:DA 2775 38 0.5205 0.0137 1.0000 5.61e-14
38 4v7m:BA 2789 38 0.5205 0.0136 1.0000 5.61e-14
39 4v7l:DA 2800 38 0.5205 0.0136 1.0000 5.61e-14
40 4v7l:BA 2800 38 0.5205 0.0136 1.0000 5.61e-14
41 4v7j:AA 2848 38 0.5205 0.0133 1.0000 5.61e-14 4v7j:BA, 4v7k:AA, 4v7k:BA, 4v8n:BA, 4v8n:DA, 4v8x:BA, 4v8x:DA
42 4v6g:DA 2886 38 0.5205 0.0132 1.0000 5.61e-14
43 4v6g:BA 2885 38 0.5205 0.0132 1.0000 5.61e-14
44 4v68:BA 2852 38 0.5205 0.0133 1.0000 5.61e-14
45 4v68:BA 2852 36 0.4932 0.0126 1.0000 7.25e-13
46 4v63:BA 2879 38 0.5205 0.0132 1.0000 5.61e-14 4v63:DA, 4v67:BA, 4v67:DA, 4v7p:BA, 4v7p:CA, 4v9j:BA, 4v9j:DA, 4v9k:BA, 4v9k:DA, 4v9l:BA, 4v9l:DA, 4v9m:BA, 4v9m:DA, 4w29:BA, 4w29:DA
47 4v5l:BA 2901 38 0.5205 0.0131 1.0000 5.61e-14 4v5p:BA, 4v5p:DA, 4v5q:BA, 4v5q:DA, 4v5r:BA, 4v5r:DA, 4v5s:BA, 4v5s:DA, 4v8o:BA
48 4v5e:BA 2886 38 0.5205 0.0132 1.0000 5.61e-14 4v5e:DA
49 4v5c:BA 2807 38 0.5205 0.0135 1.0000 5.61e-14 4v5c:DA, 4v5d:BA, 4v5d:DA, 4v5k:BA, 4v5k:DA, 4v9i:BA, 4v9i:DA, 4wt8:C1, 4wt8:D1
50 4v4p:AA 2872 38 0.5205 0.0132 1.0000 5.61e-14
51 4v4i:w 2889 38 0.5205 0.0132 1.0000 5.61e-14 4v4j:w
52 6qnr:14 2876 38 0.5205 0.0132 1.0000 5.61e-14
53 6qnr:1H 2890 38 0.5205 0.0131 1.0000 5.61e-14
54 6qnq:14 2879 38 0.5205 0.0132 1.0000 5.61e-14
55 6qnq:1H 2879 38 0.5205 0.0132 1.0000 5.61e-14
56 6oxa:YA 2875 38 0.5205 0.0132 1.0000 5.61e-14 4w4g:YA, 4ypb:YA, 4yzv:YA, 4zsn:YA
57 6otr:YA 2878 38 0.5205 0.0132 1.0000 5.61e-14 6oxi:YA
58 6otr:RA 2891 38 0.5205 0.0131 1.0000 5.61e-14 6oxa:RA, 6oxi:RA, 4w4g:RA, 4ypb:RA, 4yzv:RA, 4zsn:RA
59 5ot7:4 2901 38 0.5205 0.0131 1.0000 5.61e-14 4v90:BA
60 6ndk:RA 2870 38 0.5205 0.0132 1.0000 5.61e-14 6ndk:YA
61 5ndj:14 2909 38 0.5205 0.0131 1.0000 5.61e-14 5ndk:14, 4v6f:AA, 4v8c:BA, 4v9a:DA, 4wqr:14, 4wra:14, 4wsd:14, 4wsm:14, 4wt1:14, 4wu1:14, 4wzd:14
62 6n1d:A23S 2879 38 0.5205 0.0132 1.0000 5.61e-14 6n1d:B23S
63 5j8b:A 2874 38 0.5205 0.0132 1.0000 5.61e-14
64 5ibb:1H 2841 38 0.5205 0.0134 1.0000 5.61e-14
65 5ib8:1H 2831 38 0.5205 0.0134 1.0000 5.61e-14
66 5ib7:1H 2860 38 0.5205 0.0133 1.0000 5.61e-14
67 5hau:2A 2868 38 0.5205 0.0132 1.0000 5.61e-14 4wpo:CA, 4wqu:CA
68 6gzq:A1 2912 38 0.5205 0.0130 1.0000 5.61e-14 6gzx:A1, 6gzx:A2, 6gzz:A1, 6gzz:A2, 5ndj:1H, 5ndk:1H, 4v6f:DA, 4v87:AA, 4v8b:BA, 4v8c:AA, 4v8d:BA, 4v8e:AA, 4v8f:AA, 4v9a:BA, 4v9b:BA, 4wq1:1H, 4wqr:1H, 4wr6:1H, 4wra:1H, 4wro:1H, 4wsd:1H, 4wsm:1H, 4wt1:1H, 4wu1:1H, 4wzd:1H
69 6gsl:1H 2895 38 0.5205 0.0131 1.0000 5.61e-14
70 8fon:RA 2881 38 0.5205 0.0132 1.0000 5.61e-14 6nsh:RA, 6nta:RA, 6nuo:RA
71 5el5:1H 2830 38 0.5205 0.0134 1.0000 5.61e-14
72 5e81:1H 2885 38 0.5205 0.0132 1.0000 5.61e-14
73 5e7k:1H 2833 38 0.5205 0.0134 1.0000 5.61e-14 5el4:1H, 5el6:1H, 5el7:1H
74 5d8b:VC 2879 38 0.5205 0.0132 1.0000 5.61e-14 5d8b:ZC
75 6cfk:2A 2867 38 0.5205 0.0133 1.0000 5.61e-14 6cfl:2A, 5czp:YA, 5czp:RA, 6czr:2A, 5dfe:YA, 5dfe:RA, 5dox:2A, 5f8k:2A, 8fc1:2A, 8fc2:2A, 8fc3:2A, 8fc4:2A, 8fc5:2A, 8fc6:2A, 5fdu:2A, 5fdv:2A, 5j30:RA, 5j30:YA, 5j3c:RA, 5j3c:YA, 7md7:2A, 6ord:RA, 6ord:YA, 7rqa:2A, 7rqb:2A, 7rqc:2A, 7rqd:2A, 7rqe:2A, 8t8b:2A, 8t8c:2A, 5uq7:A, 5uq8:A, 8vtw:2A, 8vty:2A, 6xhx:2A, 4y4o:2A
76 6cfk:1A 2872 38 0.5205 0.0132 1.0000 5.61e-14 6cfl:1A, 6czr:1A, 5dox:1A, 5f8k:1A, 8fc1:1A, 8fc2:1A, 8fc3:1A, 8fc4:1A, 8fc5:1A, 8fc6:1A, 5fdu:1A, 5fdv:1A, 6fkr:1A, 6fkr:2A, 5hau:1A, 7md7:1A, 7rqa:1A, 7rqb:1A, 7rqc:1A, 7rqd:1A, 7rqe:1A, 8t8b:1A, 8t8c:1A, 8vtw:1A, 8vty:1A, 4wpo:AA, 4wqu:AA, 6xhx:1A, 4y4o:1A
77 6c5l:BA 2901 38 0.5205 0.0131 1.0000 5.61e-14 6c5l:DA, 4v5f:BA, 4v5f:DA, 4v5g:BA, 4v5g:DA, 4v5j:BA, 4v5j:DA, 4v5m:BA, 4v5n:BA, 4v8u:BA, 4v8u:DA
78 6buw:YA 2883 38 0.5205 0.0132 1.0000 5.61e-14 6bz6:YA, 6bz7:YA, 6bz8:YA, 8fom:YA, 8fon:YA, 4l47:YA, 4l71:YA, 4lel:YA, 4lfz:YA, 4lnt:YA, 4lsk:YA, 4lt8:YA, 6nsh:YA, 6nta:YA, 6nuo:YA, 6nwy:YA, 6o3m:YA, 6of6:YA, 6oj2:YA, 6ope:YA, 6osi:YA, 4p6f:YA, 4p70:YA, 5vpo:YA, 5vpp:YA, 1vvj:RA
79 6buw:RA 2882 38 0.5205 0.0132 1.0000 5.61e-14 6bz6:RA, 6bz7:RA, 6bz8:RA, 8fom:RA, 4l47:RA, 4l71:RA, 4lel:RA, 4lfz:RA, 4lnt:RA, 4lsk:RA, 4lt8:RA, 6nwy:RA, 6o3m:RA, 6of6:RA, 6oj2:RA, 6ope:RA, 6osi:RA, 4p6f:RA, 4p70:RA, 4tua:RA, 4tua:YA, 4tub:RA, 4tub:YA, 4tuc:RA, 4tuc:YA, 4tud:RA, 4tud:YA, 4tue:RA, 4tue:YA, 5vpo:RA, 5vpp:RA, 1vvj:YA
80 6b4v:B 2880 38 0.5205 0.0132 1.0000 5.61e-14 6b4v:FB, 6boh:B, 6boh:GB, 6bok:B, 6bok:EB, 5j4d:B, 5j4d:GB
81 9b00:2A 2800 38 0.5205 0.0136 1.0000 5.61e-14 6cae:2A, 6cfj:2A, 8cvj:2A, 8cvk:2A, 8cvl:2A, 5doy:2A, 8ekb:2A, 8ev6:2A, 8ev7:2A, 8g29:2A, 8g2a:2A, 8g2b:2A, 8g2c:2A, 8g2d:2A, 5j4b:2A, 5j4c:2A, 7jql:2A, 7jqm:2A, 6n9e:2A, 6n9f:2A, 6nd5:2A, 6nd6:2A, 6o97:2A, 6of1:2A, 7rq8:2A, 7rq9:2A, 7u2h:2A, 7u2i:2A, 7u2j:2A, 6ucq:2A, 8ud6:2A, 8ud7:2A, 8ud8:2A, 6uo1:2A, 8uvr:2A, 8uvs:2A, 5vp2:2A, 8vtu:2A, 8vtv:2A, 8vtx:2A, 1vy4:DA, 1vy5:DA, 1vy6:DA, 1vy7:DA, 4w2f:DA, 4w2g:DA, 4w2h:DA, 4w2i:DA, 5w4k:2A, 5wis:2A, 5wit:2A, 6xhv:2A, 6xhw:2A, 6xhy:2A, 6xqd:2A, 6xqe:2A, 4y4p:2A, 4z3s:2A
82 9b00:1A 2871 38 0.5205 0.0132 1.0000 5.61e-14 6cae:1A, 6cfj:1A, 8cvj:1A, 8cvk:1A, 8cvl:1A, 5doy:1A, 8ekb:1A, 8ev6:1A, 8ev7:1A, 8g29:1A, 8g2a:1A, 8g2b:1A, 8g2c:1A, 8g2d:1A, 5j4b:1A, 5j4c:1A, 7jql:1A, 7jqm:1A, 6n9e:1A, 6n9f:1A, 6nd5:1A, 6nd6:1A, 6o97:1A, 6of1:1A, 7rq8:1A, 7rq9:1A, 7u2h:1A, 7u2i:1A, 7u2j:1A, 6ucq:1A, 8ud6:1A, 8ud7:1A, 8ud8:1A, 6uo1:1A, 8uvr:1A, 8uvs:1A, 5vp2:1A, 8vtu:1A, 8vtv:1A, 8vtx:1A, 4w2f:BA, 5w4k:1A, 5wis:1A, 5wit:1A, 6xhv:1A, 6xhw:1A, 6xhy:1A, 6xqd:1A, 6xqe:1A, 4y4p:1A, 4z3s:1A
83 7azs:23SB 2875 38 0.5205 0.0132 1.0000 5.61e-14
84 7azo:23SB 2873 38 0.5205 0.0132 1.0000 5.61e-14
85 7azo:23SA 2889 38 0.5205 0.0132 1.0000 5.61e-14 7azs:23SA
86 5a9z:AA 2889 38 0.5205 0.0132 1.0000 5.61e-14 5aa0:AA, 5imq:D, 5imr:D, 1ml5:a, 4v42:BA, 4v4x:BA, 4v4y:BA, 4v4z:BA
87 6gsk:1H 2811 37 0.5068 0.0132 1.0000 2.02e-13
88 6gsj:1H 2850 37 0.5068 0.0130 1.0000 2.02e-13
89 4xej:B23S 2876 38 0.5068 0.0129 0.9737 9.38e-12
90 4v8y:CN 87 31 0.4247 0.3563 1.0000 4.36e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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