>rna
gcuaaaccuagccccaaacccccaccuuacuaccaaaccuuagccaaaccauuuacauaaaguauaggcgauagaaauug
ggcgcaauagauauaguaccgcaagggaaagaugaaaaaaccaagcauaauauagcaaggacuaaccccuauaccuucug
cauaaugaauuaacuagaaauaacuuugcaaggagagccaaagcuaagacccccgaaaccagacgagcuaccuaagaaca
gcuaagagcacacccgucuauguagcaaaauagugggaagauuuauagguagaggcgacaaaccuaccgagccuggugau
agcugguuguccaagauagaaucuuaguucaacuuuaaauuugcccacagaaccaaauccccuuguaaauuuaacuguua
guccaaagaggaacagcucuuuggacacuaggaaaaaaccuuguagagagaguaaaaaauuuaacacccauaguaggccu
aaaagcagccaccaauuaagaaagcguucaagcucaacacaaaaaucccaaacauauaacugaacuccucacacccaauu
ggaccaaucuaucacccuauagaagaacuaauguuaguauaaguaacaugaaaacauucuccuccgcauaagccugcguc
agcaacugacaauuaacagcccaauaucuacaaucaaccaacaagucauuauuacccucacugucaacccaacacaggca
ugcucauaaggaaagguuaaaaaaaguaaaaggaacucggcaaaucuuaccccgccuguuuaccaaaaacaucaccucua
gcaucaccaguauuagaggcaccgccugcccagugacacauguuuaacggccgcgguacccuaaccgugcaaagguagca
uaaucacuuguuccuuaaauagggaccuguaugaauggcuccacgaggguucagcugucucuuacuuuuaaccagugaaa
uugaccugcccgugaagaggcgggcauaacacagcaagacgagaagacccuauggagcuuuaauuuauuaaugcaaacac
cugcauuaaaaauuucgguuggggcgaccucggagcagaacccaaccuccgagcaguacaugcuaagacuucaccaguca
aagcgaaccucaauugauccaauaacuugaccaacggaacaaguuacccuagggauaacagcgcaauccuauucuagagu
ccauaucaacaauaggguuuacgaccucgauguuggaucaggacaucccgauggugcagccgcuauuaaagguucguuug
uucaacgauuaaaguccuacgugaucugaguucagaccggaguaauccaggucgguuucuaucuacuuuauuccucccug
uacgaaaggacaagagaaauaaggccuacuucacaaagcgccuucccccguaaaugauaucaucucaacuuagauaccca
cacccaagaacaggguu

The query sequence (length=1457) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	7a5h:A	1457	1457	1.0000	1.0000	1.0000	0.0
2	5ool:A	1441	1457	0.9890	1.0000	0.9890	0.0
3	3j7y:A	1472	1476	0.9973	0.9871	0.9844	0.0	3j9m:A, 6nu2:A, 6nu3:A
4	7oid:A	1472	1476	0.9959	0.9857	0.9831	0.0	7oie:A
5	7a5i:A3	1485	1485	1.0000	0.9811	0.9811	0.0
6	7of4:A	1463	1473	0.9918	0.9877	0.9810	0.0	7of6:A
7	8k2a:L1	1500	1500	1.0000	0.9713	0.9713	0.0	8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
8	7og4:XA	1498	1499	0.9993	0.9720	0.9713	0.0
9	6zsa:XA	1499	1500	0.9993	0.9713	0.9707	0.0	6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
10	6zsc:XA	1500	1501	0.9993	0.9707	0.9700	0.0
11	6zs9:XA	1501	1502	0.9993	0.9700	0.9694	0.0
12	6i9r:A	1501	1502	0.9986	0.9694	0.9687	0.0
13	7l08:A	1527	1526	1.0000	0.9542	0.9548	0.0	7l20:A, 6vlz:A, 6vmi:A
14	6zm6:A	1531	1528	0.9993	0.9510	0.9529	0.0
15	6zm5:A	1534	1531	1.0000	0.9498	0.9517	0.0
16	7pd3:A	1280	1284	0.8744	0.9953	0.9922	0.0
17	7a5j:A	1492	1039	0.7131	0.6964	1.0000	0.0
18	7a5j:A	1492	419	0.2876	0.2808	1.0000	0.0
19	7a5f:A3	1503	1054	0.7104	0.6886	0.9820	0.0	7a5g:A3, 7a5k:A3
20	7a5f:A3	1503	419	0.2876	0.2788	1.0000	0.0	7a5g:A3, 7a5k:A3
21	8any:A	1558	1084	0.7131	0.6669	0.9585	0.0	8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
22	8any:A	1558	437	0.2876	0.2689	0.9588	0.0	8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
23	7oic:A	1383	837	0.5662	0.5965	0.9857	0.0
24	7oic:A	1383	546	0.3720	0.3919	0.9927	0.0
25	7of5:A	1389	832	0.5635	0.5911	0.9868	0.0
26	7of5:A	1389	550	0.3727	0.3909	0.9873	0.0
27	7of2:A	1410	838	0.5649	0.5837	0.9821	0.0
28	7of2:A	1410	579	0.3912	0.4043	0.9845	0.0
29	7o9k:A	1436	865	0.5752	0.5836	0.9688	0.0
30	7o9k:A	1436	586	0.3946	0.4004	0.9812	0.0
31	7of3:A	1386	841	0.5628	0.5916	0.9750	0.0
32	7of3:A	1386	551	0.3631	0.3817	0.9601	0.0
33	7of7:A	1376	832	0.5566	0.5894	0.9748	0.0
34	7of7:A	1376	550	0.3706	0.3924	0.9818	0.0
35	7o9m:A	1454	877	0.5786	0.5798	0.9612	0.0
36	7o9m:A	1454	587	0.3946	0.3955	0.9796	0.0
37	8qsj:A	1418	855	0.5669	0.5825	0.9661	0.0
38	8qsj:A	1418	547	0.3596	0.3695	0.9580	0.0
39	7of0:A	1376	841	0.5580	0.5908	0.9667	0.0
40	7of0:A	1376	551	0.3610	0.3823	0.9546	0.0
41	7odt:A	1453	868	0.5690	0.5705	0.9551	0.0
42	7odt:A	1453	588	0.3933	0.3944	0.9745	0.0
43	7ods:A	1445	868	0.5690	0.5737	0.9551	0.0
44	7ods:A	1445	554	0.3672	0.3702	0.9657	0.0
45	7odr:A	1448	868	0.5690	0.5725	0.9551	0.0
46	7odr:A	1448	555	0.3679	0.3702	0.9658	0.0
47	8pk0:A	1423	867	0.5642	0.5777	0.9481	0.0
48	8pk0:A	1423	554	0.3569	0.3654	0.9386	0.0
49	7po4:A	1145	854	0.5326	0.6777	0.9087	0.0
50	7po4:A	1145	111	0.0741	0.0943	0.9730	5.06e-47
51	7po4:A	1145	130	0.0803	0.1022	0.9000	3.97e-38
52	7po4:A	1145	82	0.0515	0.0655	0.9146	4.05e-23
53	5aj4:BA	1515	1368	0.7529	0.7241	0.8019	0.0	4v19:A
54	7nqh:BA	1544	1385	0.7570	0.7144	0.7964	0.0	7nql:BA, 7nsh:BA, 7nsi:BA, 7nsj:BA, 6ydp:BA, 6ydw:BA
55	6gaw:BA	1549	1390	0.7584	0.7134	0.7950	0.0	6gb2:BA
56	7oi8:A	1092	478	0.3212	0.4286	0.9791	0.0	7oi9:A, 7oia:A, 7oib:A, 5oom:A
57	7oi8:A	1092	243	0.1627	0.2170	0.9753	7.67e-115	7oi9:A, 7oia:A, 7oib:A, 5oom:A
58	7oi8:A	1092	245	0.1627	0.2170	0.9673	4.61e-112	7oi9:A, 7oia:A, 7oib:A, 5oom:A
59	7oi8:A	1092	118	0.0769	0.1026	0.9492	2.35e-45	7oi9:A, 7oia:A, 7oib:A, 5oom:A
60	7oi8:A	1092	34	0.0233	0.0311	1.0000	2.47e-10	7oi9:A, 7oia:A, 7oib:A, 5oom:A
61	7oi7:A	1054	478	0.3212	0.4440	0.9791	0.0
62	7oi7:A	1054	245	0.1627	0.2249	0.9673	4.61e-112
63	7oi7:A	1054	125	0.0817	0.1129	0.9520	3.02e-49
64	7oi7:A	1054	118	0.0769	0.1063	0.9492	2.35e-45
65	7oi7:A	1054	81	0.0556	0.0769	1.0000	1.85e-36
66	7oi7:A	1054	34	0.0233	0.0323	1.0000	2.47e-10
67	7oi6:A	1208	478	0.3212	0.3874	0.9791	0.0
68	7oi6:A	1208	381	0.2423	0.2922	0.9265	9.44e-149
69	7oi6:A	1208	245	0.1627	0.1962	0.9673	4.61e-112
70	7oi6:A	1208	118	0.0769	0.0927	0.9492	2.35e-45
71	7oi6:A	1208	34	0.0233	0.0281	1.0000	2.47e-10
72	8qu5:A	1049	446	0.2992	0.4156	0.9776	0.0
73	8qu5:A	1049	243	0.1627	0.2259	0.9753	7.67e-115
74	8qu5:A	1049	232	0.1537	0.2135	0.9655	7.78e-105
75	8qu5:A	1049	118	0.0769	0.1068	0.9492	2.35e-45
76	8qu5:A	1049	34	0.0233	0.0324	1.0000	2.47e-10
77	7qh7:A	1256	464	0.3082	0.3575	0.9677	0.0
78	7qh7:A	1256	549	0.3397	0.3941	0.9016	0.0
79	7qh7:A	1256	303	0.2018	0.2341	0.9703	1.23e-142
80	4ce4:A	1444	721	0.4200	0.4238	0.8488	0.0
81	8qu1:A	938	447	0.2924	0.4542	0.9530	0.0
82	8qu1:A	938	171	0.1139	0.1770	0.9708	1.74e-76
83	8qu1:A	938	122	0.0796	0.1237	0.9508	1.41e-47
84	8qu1:A	938	118	0.0769	0.1194	0.9492	2.35e-45
85	8qu1:A	938	34	0.0233	0.0362	1.0000	2.47e-10
86	8qu1:A	938	32	0.0220	0.0341	1.0000	3.20e-09
87	8oin:B8	1571	986	0.5333	0.4946	0.7880	7.04e-175	8oiq:B8
88	8oin:B8	1571	271	0.1688	0.1566	0.9077	2.82e-99	8oiq:B8
89	7qh6:A	1133	260	0.1784	0.2295	1.0000	5.76e-136
90	7qh6:A	1133	302	0.1977	0.2542	0.9536	4.49e-132
91	7qh6:A	1133	245	0.1682	0.2162	1.0000	1.26e-127
92	7qh6:A	1133	184	0.1263	0.1624	1.0000	1.02e-93
93	7qh6:A	1133	148	0.0995	0.1280	0.9797	1.37e-67

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